miRNA display CGI


Results 61 - 80 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 113618 0.67 0.874287
Target:  5'- uUCUCUGGGAaucGCCuGCGCgGCCGgCGCc -3'
miRNA:   3'- uAGGGGCUUU---UGGuCGCG-UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 22820 0.67 0.866939
Target:  5'- gAUCUCCGGAuccAGCCGaCGgACCGcCGCc -3'
miRNA:   3'- -UAGGGGCUU---UUGGUcGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 24989 0.67 0.866939
Target:  5'- -gCCCCcu--GCUGGcCGaCACCGUCGCc -3'
miRNA:   3'- uaGGGGcuuuUGGUC-GC-GUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 25939 0.67 0.866939
Target:  5'- cUgCCCGcc-GgCAGUGCGCCGUgCGCu -3'
miRNA:   3'- uAgGGGCuuuUgGUCGCGUGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 50090 0.67 0.866939
Target:  5'- cUCCUgCGGAGGCCGGgcuggugGCGCCG-CGCa -3'
miRNA:   3'- uAGGG-GCUUUUGGUCg------CGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 41543 0.67 0.866939
Target:  5'- -gCCCCGGcgG--GGCGCACCG-CGUa -3'
miRNA:   3'- uaGGGGCUuuUggUCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 78431 0.67 0.866939
Target:  5'- -gCCCCGugaAGAACaCGGCGUACgccgaguaUGUCGCc -3'
miRNA:   3'- uaGGGGC---UUUUG-GUCGCGUG--------GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 108270 0.67 0.866939
Target:  5'- -cCCCCGAc-GCCAGCG-ACCcccagCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUCGCgUGGca---GCG- -5'
5504 5' -56.2 NC_001798.1 + 137371 0.67 0.85938
Target:  5'- -gCCCUGGu--CCGGCGCACCccUCGg -3'
miRNA:   3'- uaGGGGCUuuuGGUCGCGUGGc-AGCg -5'
5504 5' -56.2 NC_001798.1 + 36220 0.67 0.85938
Target:  5'- -aCCCCGAccGCCGcCGCGCC--CGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUcGCGUGGcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 96661 0.67 0.85938
Target:  5'- -cCCCCGAGcggcGCCacGGcCGCGCUGgagCGCg -3'
miRNA:   3'- uaGGGGCUUu---UGG--UC-GCGUGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 108686 0.67 0.85938
Target:  5'- -cCCCCGggGccGCCcGCGgggaCACCGagGCa -3'
miRNA:   3'- uaGGGGCuuU--UGGuCGC----GUGGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 134144 0.67 0.85938
Target:  5'- -cCCCCGAcgucUCGGCccccgGgGCCGUCGCg -3'
miRNA:   3'- uaGGGGCUuuu-GGUCG-----CgUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 145892 0.67 0.85938
Target:  5'- -aCCCCGAccGCCGccGCGCcccACCGgcgggaUCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGU--CGCG---UGGC------AGCG- -5'
5504 5' -56.2 NC_001798.1 + 63430 0.67 0.85938
Target:  5'- -cUCCCGAAAcaGCCGguacacGCGCGCCGccUCGg -3'
miRNA:   3'- uaGGGGCUUU--UGGU------CGCGUGGC--AGCg -5'
5504 5' -56.2 NC_001798.1 + 64209 0.67 0.851616
Target:  5'- -aCCCCGA---UCGGaGCGCUGUUGCu -3'
miRNA:   3'- uaGGGGCUuuuGGUCgCGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 154465 0.67 0.851616
Target:  5'- cUCCCCcGGAGCCGGCcGCuCCccCGCg -3'
miRNA:   3'- uAGGGGcUUUUGGUCG-CGuGGcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 137980 0.67 0.851616
Target:  5'- -gCCCCc---GCCugGGCGCGCCGcagcUCGCg -3'
miRNA:   3'- uaGGGGcuuuUGG--UCGCGUGGC----AGCG- -5'
5504 5' -56.2 NC_001798.1 + 117376 0.67 0.851616
Target:  5'- -aCCgCCGucgcGGCCAcGgGCACCGUcCGCa -3'
miRNA:   3'- uaGG-GGCuu--UUGGU-CgCGUGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 75996 0.67 0.851616
Target:  5'- -gCCCCGGGcGCCGGCgGCAgggccCCGUgccCGCc -3'
miRNA:   3'- uaGGGGCUUuUGGUCG-CGU-----GGCA---GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.