miRNA display CGI


Results 41 - 60 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 43039 0.66 0.894359
Target:  5'- -gCCCCGGgcgcaAAugCGGCGCgugagccGCCGgccgagCGCg -3'
miRNA:   3'- uaGGGGCU-----UUugGUCGCG-------UGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 86902 0.66 0.891032
Target:  5'- -aCCCCGGcgugGAgcGCCGG-GCcucccgcaagagccuGCCGUCGCa -3'
miRNA:   3'- uaGGGGCU----UU--UGGUCgCG---------------UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 93241 0.66 0.891032
Target:  5'- -gCCCCugcuuGAGGGCCAGgaaacgcccgcggccCGCGCCGgCGCc -3'
miRNA:   3'- uaGGGG-----CUUUUGGUC---------------GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 16428 0.66 0.888331
Target:  5'- cGUCUuuGggGACggCGGCuCGCCGcCGCg -3'
miRNA:   3'- -UAGGggCuuUUG--GUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 23335 0.66 0.888331
Target:  5'- -aCCaCCGcc-GCCGGCGCGCCcccCGCc -3'
miRNA:   3'- uaGG-GGCuuuUGGUCGCGUGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 79737 0.66 0.888331
Target:  5'- -gCCCCGAcggucacGGCCAuguacGUGCugACCGUCGUg -3'
miRNA:   3'- uaGGGGCUu------UUGGU-----CGCG--UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 91500 0.66 0.888331
Target:  5'- -cCCCCGGcucuuACCGGCGgACCcG-CGCc -3'
miRNA:   3'- uaGGGGCUuu---UGGUCGCgUGG-CaGCG- -5'
5504 5' -56.2 NC_001798.1 + 104751 0.66 0.888331
Target:  5'- cGUCgCCGAuuaccgcGGCCAGaCGCGCCaGguagCGCg -3'
miRNA:   3'- -UAGgGGCUu------UUGGUC-GCGUGG-Ca---GCG- -5'
5504 5' -56.2 NC_001798.1 + 109677 0.66 0.888331
Target:  5'- cGUCCuCCGGGcGCCguuccuggcgGGCGCGCCcUCGg -3'
miRNA:   3'- -UAGG-GGCUUuUGG----------UCGCGUGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 123182 0.66 0.888331
Target:  5'- -gCCUCGcAGACCccgucgcGCGUGCCGUCGg -3'
miRNA:   3'- uaGGGGCuUUUGGu------CGCGUGGCAGCg -5'
5504 5' -56.2 NC_001798.1 + 150796 0.66 0.888331
Target:  5'- -cCCCCGcccgcaaCGGgGCGCCGcCGCu -3'
miRNA:   3'- uaGGGGCuuuug--GUCgCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 72588 0.66 0.888331
Target:  5'- cGUCCCuCGcGGGGCU-GCGguCCGUCGUc -3'
miRNA:   3'- -UAGGG-GC-UUUUGGuCGCguGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 99939 0.66 0.881419
Target:  5'- -gCCCCGGAAuGCCA-CGC-CCG-CGCc -3'
miRNA:   3'- uaGGGGCUUU-UGGUcGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 4479 0.66 0.881419
Target:  5'- cGUCUCCGGuccgcGGAcCCAGCGgCcCgCGUCGCg -3'
miRNA:   3'- -UAGGGGCU-----UUU-GGUCGC-GuG-GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 104804 0.66 0.881419
Target:  5'- gGUCCCCGAAcgcAACgGGaGCGCgaUCGCg -3'
miRNA:   3'- -UAGGGGCUU---UUGgUCgCGUGgcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 121078 0.66 0.881419
Target:  5'- -gCCCCGAGGAC--GCGCACa--CGCa -3'
miRNA:   3'- uaGGGGCUUUUGguCGCGUGgcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 128314 0.66 0.881419
Target:  5'- -cCCCCGu---CCGcCGCcgaaGCCGUCGCc -3'
miRNA:   3'- uaGGGGCuuuuGGUcGCG----UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 5365 0.66 0.880715
Target:  5'- -gCCCCGAc-GCCcGCGCGuccgcguCCGUgGCg -3'
miRNA:   3'- uaGGGGCUuuUGGuCGCGU-------GGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 147242 0.67 0.874287
Target:  5'- -gCCCCGggGcCCcgGGcCGCGCCGgcggCGUu -3'
miRNA:   3'- uaGGGGCuuUuGG--UC-GCGUGGCa---GCG- -5'
5504 5' -56.2 NC_001798.1 + 113618 0.67 0.874287
Target:  5'- uUCUCUGGGAaucGCCuGCGCgGCCGgCGCc -3'
miRNA:   3'- uAGGGGCUUU---UGGuCGCG-UGGCaGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.