miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 18260 0.66 0.913691
Target:  5'- --gCCCGggGGCCAGguaCGCAUCcucCGCg -3'
miRNA:   3'- uagGGGCuuUUGGUC---GCGUGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 35044 0.66 0.913691
Target:  5'- gGUCCCCG-AGGCaagaGGCGgACCcUCGg -3'
miRNA:   3'- -UAGGGGCuUUUGg---UCGCgUGGcAGCg -5'
5504 5' -56.2 NC_001798.1 + 59543 0.66 0.913691
Target:  5'- -aCCCCGGAAggcggagaggggGCUGGgGCuCgCGUCGCc -3'
miRNA:   3'- uaGGGGCUUU------------UGGUCgCGuG-GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 127506 0.66 0.913691
Target:  5'- cGUgCCgGAGGgcauCCGGCGcCACCuUCGCa -3'
miRNA:   3'- -UAgGGgCUUUu---GGUCGC-GUGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 137201 0.66 0.913691
Target:  5'- gAUCgCUGAc--CUGGCGCACC-UCGCa -3'
miRNA:   3'- -UAGgGGCUuuuGGUCGCGUGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 131543 0.66 0.9077
Target:  5'- cUUCCCGGAcGCgAGCGCcCCGaCGg -3'
miRNA:   3'- uAGGGGCUUuUGgUCGCGuGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 122417 0.66 0.9077
Target:  5'- -gCCCUGAcggAGGCCuGUGCcGCCGagCGCg -3'
miRNA:   3'- uaGGGGCU---UUUGGuCGCG-UGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 145477 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145498 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145519 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 154030 0.66 0.895017
Target:  5'- aGUCUgCGGuuGggAGCGCGCCGgggCGCg -3'
miRNA:   3'- -UAGGgGCUuuUggUCGCGUGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 32370 0.66 0.901474
Target:  5'- -gCCCCGAGcccggggcccgcGAcCCGGCGC-CCGgccucaCGCg -3'
miRNA:   3'- uaGGGGCUU------------UU-GGUCGCGuGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 1212 0.66 0.901474
Target:  5'- cGUCCCCGcgcGGCCcGCG-GCCGaCGCc -3'
miRNA:   3'- -UAGGGGCuu-UUGGuCGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 51156 0.66 0.901474
Target:  5'- -aCCCCGGGucCCGacGCGCGuCCGagGCc -3'
miRNA:   3'- uaGGGGCUUuuGGU--CGCGU-GGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 124097 0.66 0.903993
Target:  5'- -gCCCCGAcGgcccacaucgauuccGCCAaCGCGCUGUgGCg -3'
miRNA:   3'- uaGGGGCUuU---------------UGGUcGCGUGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 82064 0.66 0.907088
Target:  5'- -cCCCCGggGccccgcgGCCGGCcCACCccggCGCc -3'
miRNA:   3'- uaGGGGCuuU-------UGGUCGcGUGGca--GCG- -5'
5504 5' -56.2 NC_001798.1 + 23574 0.66 0.9077
Target:  5'- -gCCCCGggGG-CGGCGCcCCGgccgaGCc -3'
miRNA:   3'- uaGGGGCuuUUgGUCGCGuGGCag---CG- -5'
5504 5' -56.2 NC_001798.1 + 57386 0.66 0.9077
Target:  5'- -aCCCgCGAGccguaccgGGCCAGCGggUCGUgGCg -3'
miRNA:   3'- uaGGG-GCUU--------UUGGUCGCguGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 79110 0.66 0.9077
Target:  5'- -gUCCUGGGcGCCaAGgGCGCCGagCGCg -3'
miRNA:   3'- uaGGGGCUUuUGG-UCgCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 102995 0.66 0.9077
Target:  5'- cUCCacgCCGggGGCCcaGGUGCGCCcGgccagCGCg -3'
miRNA:   3'- uAGG---GGCuuUUGG--UCGCGUGG-Ca----GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.