miRNA display CGI


Results 41 - 60 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 2893 0.71 0.634764
Target:  5'- gGUCCCCGcgcaggcgcaucAGcACCAGCGCGUCG-CGCa -3'
miRNA:   3'- -UAGGGGC------------UUuUGGUCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 58014 0.71 0.634764
Target:  5'- -aCCCCGAccGCCGGCuCGCCGccaucCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUCGcGUGGCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 24253 0.71 0.634764
Target:  5'- cUUCCUGcuGACCAGCcuGCGCCG-CGCc -3'
miRNA:   3'- uAGGGGCuuUUGGUCG--CGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 52712 0.71 0.640894
Target:  5'- -cCCCCGccaaauuuugggcGGACguGCGCGCCGcCGCg -3'
miRNA:   3'- uaGGGGCu------------UUUGguCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25073 0.71 0.644979
Target:  5'- -gCCCCGccccGGCCAGgGCGCCGcCGg -3'
miRNA:   3'- uaGGGGCuu--UUGGUCgCGUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 148503 0.71 0.655185
Target:  5'- cGUCCCCGggGGCagagGGCGUGCaugCGUUGUg -3'
miRNA:   3'- -UAGGGGCuuUUGg---UCGCGUG---GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 118913 0.71 0.655185
Target:  5'- cGUCUUCGAGGGCCAggcgacggacGUGCGCCuggaGUCGCu -3'
miRNA:   3'- -UAGGGGCUUUUGGU----------CGCGUGG----CAGCG- -5'
5504 5' -56.2 NC_001798.1 + 25318 0.71 0.664354
Target:  5'- -gCCCUGGAGGCCuacuGCGCcccgcggGCCGUgGCc -3'
miRNA:   3'- uaGGGGCUUUUGGu---CGCG-------UGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 98179 0.71 0.664354
Target:  5'- uGUUUCCGGAAucacgcccacCCAGCGCGCCGccuggcgauauauUCGCg -3'
miRNA:   3'- -UAGGGGCUUUu---------GGUCGCGUGGC-------------AGCG- -5'
5504 5' -56.2 NC_001798.1 + 109372 0.71 0.665372
Target:  5'- --gCCCGggGAgCAGCGgGCUG-CGCg -3'
miRNA:   3'- uagGGGCuuUUgGUCGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 135763 0.71 0.665372
Target:  5'- aAUCCuCCGGcgGCCGGC-CGCCGgccCGCc -3'
miRNA:   3'- -UAGG-GGCUuuUGGUCGcGUGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 3252 0.71 0.665372
Target:  5'- -cCCCCGcggcgccguAGCCGGCggGCACCG-CGCg -3'
miRNA:   3'- uaGGGGCuu-------UUGGUCG--CGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 28040 0.7 0.675532
Target:  5'- gGUCCCugcguacgacuCGGGAACCgcggucgagAGCGCGCCGgcCGCg -3'
miRNA:   3'- -UAGGG-----------GCUUUUGG---------UCGCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 28947 0.7 0.675532
Target:  5'- uAUCCgCGAGGGcCCGGCGCcgccCCGcCGCu -3'
miRNA:   3'- -UAGGgGCUUUU-GGUCGCGu---GGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 132144 0.7 0.675532
Target:  5'- -gCCgCCGggGGCCGGCGgGCgGggCGCc -3'
miRNA:   3'- uaGG-GGCuuUUGGUCGCgUGgCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 1356 0.7 0.675532
Target:  5'- cUCCgCCGG--GCCGccGCGCACggCGUCGCg -3'
miRNA:   3'- uAGG-GGCUuuUGGU--CGCGUG--GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 84878 0.7 0.682624
Target:  5'- uGUCCUCGA--ACCAGacggccgcguccccCGCGCCGucUCGCg -3'
miRNA:   3'- -UAGGGGCUuuUGGUC--------------GCGUGGC--AGCG- -5'
5504 5' -56.2 NC_001798.1 + 82001 0.7 0.685657
Target:  5'- cGUCCCCGggGgcgaccGCCGcCGCGgCCGcCGCc -3'
miRNA:   3'- -UAGGGGCuuU------UGGUcGCGU-GGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 57729 0.7 0.685657
Target:  5'- -cCCCCGcgaAGGACCggugGGCGCGCCcggCGCa -3'
miRNA:   3'- uaGGGGC---UUUUGG----UCGCGUGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 9038 0.7 0.685657
Target:  5'- -cCCCCGc-AGCCAGCGCACgG-CGa -3'
miRNA:   3'- uaGGGGCuuUUGGUCGCGUGgCaGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.