miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 81817 0.73 0.514082
Target:  5'- cUCCCCGcc--CCGGuCGCcCCGUCGCc -3'
miRNA:   3'- uAGGGGCuuuuGGUC-GCGuGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 138727 0.73 0.533707
Target:  5'- -gCCCCGG--GCCGGCGCGCUc-CGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUCGCGUGGcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 70426 0.73 0.54362
Target:  5'- cUCCCCGGGcuGCUGGUGCACCGcaUgGCg -3'
miRNA:   3'- uAGGGGCUUu-UGGUCGCGUGGC--AgCG- -5'
5504 5' -56.2 NC_001798.1 + 139285 0.73 0.54362
Target:  5'- cGUCCUCGggGGCgcaUAGCGC-CgCGUCGCc -3'
miRNA:   3'- -UAGGGGCuuUUG---GUCGCGuG-GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 69461 0.73 0.54362
Target:  5'- uGUCCCCcAAAAgCAcCGgGCCGUCGCg -3'
miRNA:   3'- -UAGGGGcUUUUgGUcGCgUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 44240 0.73 0.54362
Target:  5'- --gCCCGAcGACCgAGCGCAUCGauUCGCc -3'
miRNA:   3'- uagGGGCUuUUGG-UCGCGUGGC--AGCG- -5'
5504 5' -56.2 NC_001798.1 + 29375 0.72 0.562614
Target:  5'- uUCCCCGggGGCgGGCaccacucagggccGCGCCGgcggggCGCc -3'
miRNA:   3'- uAGGGGCuuUUGgUCG-------------CGUGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 36470 0.72 0.573693
Target:  5'- -aCCCCGGAAgcGCCgggagGGgGCGCCGgCGCg -3'
miRNA:   3'- uaGGGGCUUU--UGG-----UCgCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 138788 0.72 0.573693
Target:  5'- cUgCCUGAGAaacGCCcccaGGCGCugCGUCGCc -3'
miRNA:   3'- uAgGGGCUUU---UGG----UCGCGugGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 41779 0.72 0.592942
Target:  5'- -gUCCCGAc-GCuCAGCGCgagaaagguccggGCCGUCGCg -3'
miRNA:   3'- uaGGGGCUuuUG-GUCGCG-------------UGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 76572 0.72 0.593958
Target:  5'- -gUCCCGgcGACCGGCcccGCGCCGUaCGUc -3'
miRNA:   3'- uaGGGGCuuUUGGUCG---CGUGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 55833 0.72 0.593958
Target:  5'- cAUCCCgcguUGAAuuccuGCCAGC-CGCUGUCGCa -3'
miRNA:   3'- -UAGGG----GCUUu----UGGUCGcGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 54651 0.72 0.593958
Target:  5'- -cCCCCGAGcagcggccggcAGCCgcGGCGCGCCcGcUCGCg -3'
miRNA:   3'- uaGGGGCUU-----------UUGG--UCGCGUGG-C-AGCG- -5'
5504 5' -56.2 NC_001798.1 + 31540 0.72 0.604136
Target:  5'- -gCCCCGggGggggaggucuGCCacagucgucggGGCGCGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuU----------UGG-----------UCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 73308 0.72 0.611273
Target:  5'- --aCCCGGcccacaggacacgcAGGCCcGCGCGCCGUCGa -3'
miRNA:   3'- uagGGGCU--------------UUUGGuCGCGUGGCAGCg -5'
5504 5' -56.2 NC_001798.1 + 117191 0.72 0.614334
Target:  5'- -aCCCCGGGuuCgGGUuCACCGUCGUg -3'
miRNA:   3'- uaGGGGCUUuuGgUCGcGUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 4740 0.71 0.624546
Target:  5'- cUCCCCGGAcGCCGGgGCcGCC-UCGUc -3'
miRNA:   3'- uAGGGGCUUuUGGUCgCG-UGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 76615 0.71 0.624546
Target:  5'- uGUCCCCcGAGGCCAcGCGCaugGCCGaagaCGCg -3'
miRNA:   3'- -UAGGGGcUUUUGGU-CGCG---UGGCa---GCG- -5'
5504 5' -56.2 NC_001798.1 + 18603 0.71 0.624546
Target:  5'- -cCCCCGGGu-CC-GCGCGCCGUCccGCc -3'
miRNA:   3'- uaGGGGCUUuuGGuCGCGUGGCAG--CG- -5'
5504 5' -56.2 NC_001798.1 + 98607 0.71 0.627611
Target:  5'- -gCCCCGGcgGCCccccgcgccucgggcGGCGUggccgcgACCGUCGCg -3'
miRNA:   3'- uaGGGGCUuuUGG---------------UCGCG-------UGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.