miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 5939 0.69 0.773711
Target:  5'- uUCCUCGcgcacauaaAGGGCCGGCGUcCCgGUCGCc -3'
miRNA:   3'- uAGGGGC---------UUUUGGUCGCGuGG-CAGCG- -5'
5504 5' -56.2 NC_001798.1 + 6997 0.78 0.295688
Target:  5'- -cCCCCacccAACCAGCGCGCCGgCGCu -3'
miRNA:   3'- uaGGGGcuu-UUGGUCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 7342 0.69 0.782986
Target:  5'- uUCCCCGAGAGcCCAGgGaACCG-CGa -3'
miRNA:   3'- uAGGGGCUUUU-GGUCgCgUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 9038 0.7 0.685657
Target:  5'- -cCCCCGc-AGCCAGCGCACgG-CGa -3'
miRNA:   3'- uaGGGGCuuUUGGUCGCGUGgCaGCg -5'
5504 5' -56.2 NC_001798.1 + 9646 0.74 0.504379
Target:  5'- -gCCCCG-AGGCgCAGCGgGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuUUUG-GUCGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 9960 0.69 0.73544
Target:  5'- aGUCCUgGAAcAGCCGGCGUACUG-CGg -3'
miRNA:   3'- -UAGGGgCUU-UUGGUCGCGUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 10428 0.68 0.827164
Target:  5'- -aCCaCCGAc-GCCacuuGGCGCGCCucGUCGCu -3'
miRNA:   3'- uaGG-GGCUuuUGG----UCGCGUGG--CAGCG- -5'
5504 5' -56.2 NC_001798.1 + 16428 0.66 0.888331
Target:  5'- cGUCUuuGggGACggCGGCuCGCCGcCGCg -3'
miRNA:   3'- -UAGGggCuuUUG--GUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 17805 0.67 0.843655
Target:  5'- -aCCCCG-GGAUgAGCGCuCCGuggaUCGCg -3'
miRNA:   3'- uaGGGGCuUUUGgUCGCGuGGC----AGCG- -5'
5504 5' -56.2 NC_001798.1 + 18260 0.66 0.913691
Target:  5'- --gCCCGggGGCCAGguaCGCAUCcucCGCg -3'
miRNA:   3'- uagGGGCuuUUGGUC---GCGUGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 18603 0.71 0.624546
Target:  5'- -cCCCCGGGu-CC-GCGCGCCGUCccGCc -3'
miRNA:   3'- uaGGGGCUUuuGGuCGCGUGGCAG--CG- -5'
5504 5' -56.2 NC_001798.1 + 20497 0.74 0.472952
Target:  5'- gAUCCCCgGAAGACUGGCcggggccugggguuGCGCCG-CGCg -3'
miRNA:   3'- -UAGGGG-CUUUUGGUCG--------------CGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 20767 0.7 0.715732
Target:  5'- cUCCCgCGggGAgcgaCGGCGC-CCGcCGCg -3'
miRNA:   3'- uAGGG-GCuuUUg---GUCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 22397 0.7 0.725626
Target:  5'- -aCCCCGGcGAGCCGGgGCGCggcggCGUCGa -3'
miRNA:   3'- uaGGGGCU-UUUGGUCgCGUG-----GCAGCg -5'
5504 5' -56.2 NC_001798.1 + 22820 0.67 0.866939
Target:  5'- gAUCUCCGGAuccAGCCGaCGgACCGcCGCc -3'
miRNA:   3'- -UAGGGGCUU---UUGGUcGCgUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 22852 0.7 0.695738
Target:  5'- -aCCCCGAAcccgGACCGuCGCcCCGcCGCg -3'
miRNA:   3'- uaGGGGCUU----UUGGUcGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 23335 0.66 0.888331
Target:  5'- -aCCaCCGcc-GCCGGCGCGCCcccCGCc -3'
miRNA:   3'- uaGG-GGCuuuUGGUCGCGUGGca-GCG- -5'
5504 5' -56.2 NC_001798.1 + 23574 0.66 0.9077
Target:  5'- -gCCCCGggGG-CGGCGCcCCGgccgaGCc -3'
miRNA:   3'- uaGGGGCuuUUgGUCGCGuGGCag---CG- -5'
5504 5' -56.2 NC_001798.1 + 24253 0.71 0.634764
Target:  5'- cUUCCUGcuGACCAGCcuGCGCCG-CGCc -3'
miRNA:   3'- uAGGGGCuuUUGGUCG--CGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 24286 0.68 0.827164
Target:  5'- -gCCCCugcuggcgcgcGAGAACgCGGCGCugACCGgggCGCg -3'
miRNA:   3'- uaGGGG-----------CUUUUG-GUCGCG--UGGCa--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.