miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 24401 0.68 0.827164
Target:  5'- -gCCCCGuu-GCCgucGGCgGCGgCGUCGCc -3'
miRNA:   3'- uaGGGGCuuuUGG---UCG-CGUgGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 24989 0.67 0.866939
Target:  5'- -gCCCCcu--GCUGGcCGaCACCGUCGCc -3'
miRNA:   3'- uaGGGGcuuuUGGUC-GC-GUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 25073 0.71 0.644979
Target:  5'- -gCCCCGccccGGCCAGgGCGCCGcCGg -3'
miRNA:   3'- uaGGGGCuu--UUGGUCgCGUGGCaGCg -5'
5504 5' -56.2 NC_001798.1 + 25114 0.66 0.895017
Target:  5'- -cCCCCGAAGAagAGcCGCGCgGaCGCc -3'
miRNA:   3'- uaGGGGCUUUUggUC-GCGUGgCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25160 0.68 0.827164
Target:  5'- cUCCCgCGggGGCC-GCGCcccccgccccGCCGaCGCc -3'
miRNA:   3'- uAGGG-GCuuUUGGuCGCG----------UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25318 0.71 0.664354
Target:  5'- -gCCCUGGAGGCCuacuGCGCcccgcggGCCGUgGCc -3'
miRNA:   3'- uaGGGGCUUUUGGu---CGCG-------UGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 25423 0.68 0.801122
Target:  5'- -gCCUCGcuGGCCGcGCGCugCGcCGCc -3'
miRNA:   3'- uaGGGGCuuUUGGU-CGCGugGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25454 0.66 0.913691
Target:  5'- -cCCCCGG----CGGCGCGCCcGcCGCc -3'
miRNA:   3'- uaGGGGCUuuugGUCGCGUGG-CaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25811 0.7 0.725626
Target:  5'- aGUUCCUGggGcugcugGCCGGCGCcugcgACCGcCGCc -3'
miRNA:   3'- -UAGGGGCuuU------UGGUCGCG-----UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 25939 0.67 0.866939
Target:  5'- cUgCCCGcc-GgCAGUGCGCCGUgCGCu -3'
miRNA:   3'- uAgGGGCuuuUgGUCGCGUGGCA-GCG- -5'
5504 5' -56.2 NC_001798.1 + 26155 0.69 0.773711
Target:  5'- uGUCCCCGcgcgaguACCGcCGCGCCGU-GCu -3'
miRNA:   3'- -UAGGGGCuuu----UGGUcGCGUGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 27471 0.67 0.843655
Target:  5'- aGUCCCCGuccugccgcgcgGGGGCgGGCGCgggaaaaaaGCCG-CGCg -3'
miRNA:   3'- -UAGGGGC------------UUUUGgUCGCG---------UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 27925 0.69 0.758612
Target:  5'- gGUCCCCGccgccggggucCCGGCGCcgGCCG-CGCc -3'
miRNA:   3'- -UAGGGGCuuuu-------GGUCGCG--UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 27982 0.68 0.792126
Target:  5'- -gCCCCGGcgcuCCAGcCGUGCCG-CGCc -3'
miRNA:   3'- uaGGGGCUuuu-GGUC-GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 28040 0.7 0.675532
Target:  5'- gGUCCCugcguacgacuCGGGAACCgcggucgagAGCGCGCCGgcCGCg -3'
miRNA:   3'- -UAGGG-----------GCUUUUGG---------UCGCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 28372 0.69 0.73544
Target:  5'- cGUCCCCGcccg-CGGaCGCGCCG-CGCg -3'
miRNA:   3'- -UAGGGGCuuuugGUC-GCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 28947 0.7 0.675532
Target:  5'- uAUCCgCGAGGGcCCGGCGCcgccCCGcCGCu -3'
miRNA:   3'- -UAGGgGCUUUU-GGUCGCGu---GGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 28985 0.7 0.715732
Target:  5'- -gCCCCaGggGgcggcgccgGCCAaccGCGCGCCGcCGCg -3'
miRNA:   3'- uaGGGG-CuuU---------UGGU---CGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 29375 0.72 0.562614
Target:  5'- uUCCCCGggGGCgGGCaccacucagggccGCGCCGgcggggCGCc -3'
miRNA:   3'- uAGGGGCuuUUGgUCG-------------CGUGGCa-----GCG- -5'
5504 5' -56.2 NC_001798.1 + 31130 0.67 0.843655
Target:  5'- -cCCCCGAAG---AGCGCcCCGgCGCg -3'
miRNA:   3'- uaGGGGCUUUuggUCGCGuGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.