miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 145498 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145477 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145456 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145435 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145414 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 144099 0.69 0.773711
Target:  5'- cUgCCCGAugauAACCAcGCGCA-CGUCGUc -3'
miRNA:   3'- uAgGGGCUu---UUGGU-CGCGUgGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 139316 0.69 0.781141
Target:  5'- -gCCCCGcguccgcaucGCCGGCGC-CCG-CGCg -3'
miRNA:   3'- uaGGGGCuuu-------UGGUCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 139285 0.73 0.54362
Target:  5'- cGUCCUCGggGGCgcaUAGCGC-CgCGUCGCc -3'
miRNA:   3'- -UAGGGGCuuUUG---GUCGCGuG-GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 138788 0.72 0.573693
Target:  5'- cUgCCUGAGAaacGCCcccaGGCGCugCGUCGCc -3'
miRNA:   3'- uAgGGGCUUU---UGG----UCGCGugGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 138727 0.73 0.533707
Target:  5'- -gCCCCGG--GCCGGCGCGCUc-CGCg -3'
miRNA:   3'- uaGGGGCUuuUGGUCGCGUGGcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 137980 0.67 0.851616
Target:  5'- -gCCCCc---GCCugGGCGCGCCGcagcUCGCg -3'
miRNA:   3'- uaGGGGcuuuUGG--UCGCGUGGC----AGCG- -5'
5504 5' -56.2 NC_001798.1 + 137371 0.67 0.85938
Target:  5'- -gCCCUGGu--CCGGCGCACCccUCGg -3'
miRNA:   3'- uaGGGGCUuuuGGUCGCGUGGc-AGCg -5'
5504 5' -56.2 NC_001798.1 + 137201 0.66 0.913691
Target:  5'- gAUCgCUGAc--CUGGCGCACC-UCGCa -3'
miRNA:   3'- -UAGgGGCUuuuGGUCGCGUGGcAGCG- -5'
5504 5' -56.2 NC_001798.1 + 136197 0.66 0.895017
Target:  5'- uUCCCUGAauuuggucaauAAACCGGgGCcCCGU-GCu -3'
miRNA:   3'- uAGGGGCU-----------UUUGGUCgCGuGGCAgCG- -5'
5504 5' -56.2 NC_001798.1 + 135763 0.71 0.665372
Target:  5'- aAUCCuCCGGcgGCCGGC-CGCCGgccCGCc -3'
miRNA:   3'- -UAGG-GGCUuuUGGUCGcGUGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 135490 0.7 0.705766
Target:  5'- -aCCCCGggGACgCGGa-CGCCG-CGCa -3'
miRNA:   3'- uaGGGGCuuUUG-GUCgcGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 134451 0.69 0.773711
Target:  5'- cGUCgCCGAGcaccCCGGCGCGCgGUUGg -3'
miRNA:   3'- -UAGgGGCUUuu--GGUCGCGUGgCAGCg -5'
5504 5' -56.2 NC_001798.1 + 134144 0.67 0.85938
Target:  5'- -cCCCCGAcgucUCGGCccccgGgGCCGUCGCg -3'
miRNA:   3'- uaGGGGCUuuu-GGUCG-----CgUGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 132144 0.7 0.675532
Target:  5'- -gCCgCCGggGGCCGGCGgGCgGggCGCc -3'
miRNA:   3'- uaGG-GGCuuUUGGUCGCgUGgCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 132070 0.77 0.34673
Target:  5'- cAUgCCCGGAuuuUCGGCGCGCCGUUGUc -3'
miRNA:   3'- -UAgGGGCUUuu-GGUCGCGUGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.