miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5504 5' -56.2 NC_001798.1 + 154465 0.67 0.851616
Target:  5'- cUCCCCcGGAGCCGGCcGCuCCccCGCg -3'
miRNA:   3'- uAGGGGcUUUUGGUCG-CGuGGcaGCG- -5'
5504 5' -56.2 NC_001798.1 + 154030 0.66 0.895017
Target:  5'- aGUCUgCGGuuGggAGCGCGCCGgggCGCg -3'
miRNA:   3'- -UAGGgGCUuuUggUCGCGUGGCa--GCG- -5'
5504 5' -56.2 NC_001798.1 + 153895 0.66 0.913102
Target:  5'- cGUCgUCGuu-GCCGGCGUAguccgcgUCGUCGCu -3'
miRNA:   3'- -UAGgGGCuuuUGGUCGCGU-------GGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 153431 0.69 0.754791
Target:  5'- -cCCCCGucGGGCCAgGCGCgcgGCCGUCu- -3'
miRNA:   3'- uaGGGGCu-UUUGGU-CGCG---UGGCAGcg -5'
5504 5' -56.2 NC_001798.1 + 153236 0.69 0.734463
Target:  5'- -gCCCgCGGcggcggaGGACCcGCGCGCCGcCGCc -3'
miRNA:   3'- uaGGG-GCU-------UUUGGuCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 152992 0.74 0.485219
Target:  5'- --aCCgGGAAGCCGGCGCgggGCgGUCGCc -3'
miRNA:   3'- uagGGgCUUUUGGUCGCG---UGgCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 152635 0.67 0.843655
Target:  5'- aGUCCCC-----CCGGCGCcccGCCGgCGCg -3'
miRNA:   3'- -UAGGGGcuuuuGGUCGCG---UGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 152376 0.67 0.835501
Target:  5'- -cUCCCGccGGGCCGcCGCuCCGUCGCu -3'
miRNA:   3'- uaGGGGCu-UUUGGUcGCGuGGCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 150796 0.66 0.888331
Target:  5'- -cCCCCGcccgcaaCGGgGCGCCGcCGCu -3'
miRNA:   3'- uaGGGGCuuuug--GUCgCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 150035 0.69 0.73544
Target:  5'- aGUCCgaguCCGggGcCCGGCGCGgCGcCGCc -3'
miRNA:   3'- -UAGG----GGCuuUuGGUCGCGUgGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 149233 0.69 0.773711
Target:  5'- cUCCCCGu-GGCCcgcgggGGCGuCGCCGgccggCGCg -3'
miRNA:   3'- uAGGGGCuuUUGG------UCGC-GUGGCa----GCG- -5'
5504 5' -56.2 NC_001798.1 + 148638 0.67 0.874287
Target:  5'- cUCCCCGA--GCCAG-GCGCCcUCcCa -3'
miRNA:   3'- uAGGGGCUuuUGGUCgCGUGGcAGcG- -5'
5504 5' -56.2 NC_001798.1 + 148503 0.71 0.655185
Target:  5'- cGUCCCCGggGGCagagGGCGUGCaugCGUUGUg -3'
miRNA:   3'- -UAGGGGCuuUUGg---UCGCGUG---GCAGCG- -5'
5504 5' -56.2 NC_001798.1 + 147708 0.66 0.9077
Target:  5'- gGUCCCaGAAAGggcaggcaggUCAGcCGCACCGccCGCg -3'
miRNA:   3'- -UAGGGgCUUUU----------GGUC-GCGUGGCa-GCG- -5'
5504 5' -56.2 NC_001798.1 + 147242 0.67 0.874287
Target:  5'- -gCCCCGggGcCCcgGGcCGCGCCGgcggCGUu -3'
miRNA:   3'- uaGGGGCuuUuGG--UC-GCGUGGCa---GCG- -5'
5504 5' -56.2 NC_001798.1 + 147007 0.69 0.782986
Target:  5'- -gCCUCGggGACCcccgGGCGgGCCGggGCu -3'
miRNA:   3'- uaGGGGCuuUUGG----UCGCgUGGCagCG- -5'
5504 5' -56.2 NC_001798.1 + 146878 0.68 0.792126
Target:  5'- -aCUCCGGAGAaggaaggcugcuCC-GCGCACCGgCGCg -3'
miRNA:   3'- uaGGGGCUUUU------------GGuCGCGUGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145892 0.67 0.85938
Target:  5'- -aCCCCGAccGCCGccGCGCcccACCGgcgggaUCGCg -3'
miRNA:   3'- uaGGGGCUuuUGGU--CGCG---UGGC------AGCG- -5'
5504 5' -56.2 NC_001798.1 + 145724 0.68 0.827164
Target:  5'- -gCCCCGGccccGGCCcGCGCcCCGcCGCc -3'
miRNA:   3'- uaGGGGCUu---UUGGuCGCGuGGCaGCG- -5'
5504 5' -56.2 NC_001798.1 + 145519 0.66 0.895017
Target:  5'- -cCCCCGc---CCGGC-CGCCG-CGCg -3'
miRNA:   3'- uaGGGGCuuuuGGUCGcGUGGCaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.