miRNA display CGI


Results 81 - 100 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 122595 0.67 0.480326
Target:  5'- uCGcGUGUCUGCGG---GC-CCUGGGCCa -3'
miRNA:   3'- -GC-CGCGGGCGCCuugCGuGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 121560 0.67 0.480326
Target:  5'- uGGgGCCCGUGG-GCG-ACCUGuGCCc -3'
miRNA:   3'- gCCgCGGGCGCCuUGCgUGGGCcCGG- -5'
5506 5' -65.5 NC_001798.1 + 108656 0.67 0.480326
Target:  5'- aGGCaCCCGgaCGGccGACGCAacgcgccgccCCCGgGGCCg -3'
miRNA:   3'- gCCGcGGGC--GCC--UUGCGU----------GGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 47806 0.67 0.480326
Target:  5'- uCGGCGUCCgucGCGGGcucucACG-GCCCcGGCCc -3'
miRNA:   3'- -GCCGCGGG---CGCCU-----UGCgUGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 78332 0.67 0.480326
Target:  5'- aGGC-CaCCGCGGAGCugguccGgACCgGGGUCa -3'
miRNA:   3'- gCCGcG-GGCGCCUUG------CgUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 76705 0.67 0.480326
Target:  5'- aGGCGCgcucccggcuUCG-GGAGCGCGCCCacGCCc -3'
miRNA:   3'- gCCGCG----------GGCgCCUUGCGUGGGccCGG- -5'
5506 5' -65.5 NC_001798.1 + 3943 0.67 0.480326
Target:  5'- gCGGUaGCgCGCGuaGAAgGCGCCgGaGGCCg -3'
miRNA:   3'- -GCCG-CGgGCGC--CUUgCGUGGgC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 5878 0.67 0.480326
Target:  5'- cCGGgGCCCGCGucaucccgcGGGCucCGCCCcgaggcGGGCCc -3'
miRNA:   3'- -GCCgCGGGCGC---------CUUGc-GUGGG------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 26033 0.67 0.480326
Target:  5'- -cGCGCgCGUGGAggccGCGCACgCGcGCCu -3'
miRNA:   3'- gcCGCGgGCGCCU----UGCGUGgGCcCGG- -5'
5506 5' -65.5 NC_001798.1 + 26303 0.67 0.480326
Target:  5'- gGGCGCgccgCUGCGGcccgucuacGugGCGCUgGGGCg -3'
miRNA:   3'- gCCGCG----GGCGCC---------UugCGUGGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 48105 0.67 0.480326
Target:  5'- aCGGCGCC-GUGGAcC-C-CCCGGGUg -3'
miRNA:   3'- -GCCGCGGgCGCCUuGcGuGGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 90387 0.67 0.480326
Target:  5'- --aCGCCguCGgGGGGCGCGgUUGGGCCg -3'
miRNA:   3'- gccGCGG--GCgCCUUGCGUgGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 122361 0.67 0.480326
Target:  5'- uGGCGUgggGCGGGcgACGCGCCCGccccccgcGGCUg -3'
miRNA:   3'- gCCGCGgg-CGCCU--UGCGUGGGC--------CCGG- -5'
5506 5' -65.5 NC_001798.1 + 25211 0.67 0.480326
Target:  5'- -cGCGcCCCGCGG--CGCugACCCGccGGCCc -3'
miRNA:   3'- gcCGC-GGGCGCCuuGCG--UGGGC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 3811 0.67 0.479448
Target:  5'- cCGG-GCCCGCGccuccuccgccucGGGCGCcCCCcagaGGCCg -3'
miRNA:   3'- -GCCgCGGGCGC-------------CUUGCGuGGGc---CCGG- -5'
5506 5' -65.5 NC_001798.1 + 111000 0.67 0.471589
Target:  5'- aGGCGC--GCGGuauGCGUGgCCGcGGCCa -3'
miRNA:   3'- gCCGCGggCGCCu--UGCGUgGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 106684 0.67 0.471589
Target:  5'- aGGCuGCUCGUGcGAGCGgGCCUaccgacGGCCg -3'
miRNA:   3'- gCCG-CGGGCGC-CUUGCgUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 103311 0.67 0.471589
Target:  5'- gCGGCGCUgGCGGccgucucgagGACGCGCUCcaGCUg -3'
miRNA:   3'- -GCCGCGGgCGCC----------UUGCGUGGGccCGG- -5'
5506 5' -65.5 NC_001798.1 + 93641 0.67 0.471589
Target:  5'- gGGCGCCaggaGaUGGAcguguuucgcuACGUcgcggACUCGGGCCa -3'
miRNA:   3'- gCCGCGGg---C-GCCU-----------UGCG-----UGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 83669 0.67 0.471589
Target:  5'- gGGCGUCU--GGGAUGCACUggCGGGCg -3'
miRNA:   3'- gCCGCGGGcgCCUUGCGUGG--GCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.