miRNA display CGI


Results 61 - 80 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 125272 0.66 0.506992
Target:  5'- cCGGCGCgcacucccgaaaCCGCaGGcGCGCcaccGCCCgcaccagcucggGGGCCa -3'
miRNA:   3'- -GCCGCG------------GGCG-CCuUGCG----UGGG------------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 93141 0.66 0.506092
Target:  5'- -aGCGCCUggccucggugaugGCGGGcgACGcCGCCCuGGCCc -3'
miRNA:   3'- gcCGCGGG-------------CGCCU--UGC-GUGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 125053 0.66 0.506092
Target:  5'- aGGUgccguacgucuGCCCGUGGGugGCcacguccaccuugGCCCguuucuucgggGGGCCc -3'
miRNA:   3'- gCCG-----------CGGGCGCCUugCG-------------UGGG-----------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 51916 0.66 0.506092
Target:  5'- aCGGCguugcgGCCCGUGGGGgccgccgccgugcCGCugCUcagcgcgggagGGGCCg -3'
miRNA:   3'- -GCCG------CGGGCGCCUU-------------GCGugGG-----------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 132083 0.66 0.505194
Target:  5'- uCGGCGCgCCGuuGucuguuucuccCGCGCCUgGGGCCc -3'
miRNA:   3'- -GCCGCG-GGCgcCuu---------GCGUGGG-CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 150424 0.66 0.501607
Target:  5'- gCGGCGgCggCGCGGGGCGgACuCCGGacgcgcggggcgacgGCCg -3'
miRNA:   3'- -GCCGCgG--GCGCCUUGCgUG-GGCC---------------CGG- -5'
5506 5' -65.5 NC_001798.1 + 16997 0.66 0.49803
Target:  5'- gCGGCGCUUggGCGGAGCGCcGCgUcaaagguaaGGGCUu -3'
miRNA:   3'- -GCCGCGGG--CGCCUUGCG-UGgG---------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 119020 0.66 0.49803
Target:  5'- uGGuCGCCCG-GG---GCAUCCGGGaCCu -3'
miRNA:   3'- gCC-GCGGGCgCCuugCGUGGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 135501 0.66 0.49803
Target:  5'- gCGGaCGCCgcgcacggCGCGauccaGGACGCcCgCCGGGCCc -3'
miRNA:   3'- -GCC-GCGG--------GCGC-----CUUGCGuG-GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 26401 0.66 0.49803
Target:  5'- gGGCgcugcucgaGCCCGaCGGcGACGCGCCCccgcuGGuGCUg -3'
miRNA:   3'- gCCG---------CGGGC-GCC-UUGCGUGGG-----CC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 43130 0.66 0.49803
Target:  5'- gGGCGCgCGUcccGCGuCACgCGGGCCc -3'
miRNA:   3'- gCCGCGgGCGccuUGC-GUGgGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 79115 0.66 0.49803
Target:  5'- gGGCGCCaaggGCGccGAGCGCGCggaGGCCg -3'
miRNA:   3'- gCCGCGGg---CGC--CUUGCGUGggcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 111027 0.66 0.497138
Target:  5'- aGGCGUCCGUGGccGGCGUacaacacGCCCaGGaacgcGCCg -3'
miRNA:   3'- gCCGCGGGCGCC--UUGCG-------UGGG-CC-----CGG- -5'
5506 5' -65.5 NC_001798.1 + 95125 0.67 0.48914
Target:  5'- cCGcGCGCCCGaUGGu-CGUGCU-GGGCCu -3'
miRNA:   3'- -GC-CGCGGGC-GCCuuGCGUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 137923 0.67 0.48914
Target:  5'- gGGCgGCCCGCGccucccccGGC-CGCCCGGuccGCCg -3'
miRNA:   3'- gCCG-CGGGCGCc-------UUGcGUGGGCC---CGG- -5'
5506 5' -65.5 NC_001798.1 + 1622 0.67 0.48914
Target:  5'- uGGC-CCCGCGGcagaGGCGCAgCgGcGGCg -3'
miRNA:   3'- gCCGcGGGCGCC----UUGCGUgGgC-CCGg -5'
5506 5' -65.5 NC_001798.1 + 77195 0.67 0.48914
Target:  5'- aCGGCaaguCCCGCGGcgacggugGACGCGgCCgugCGGGCg -3'
miRNA:   3'- -GCCGc---GGGCGCC--------UUGCGU-GG---GCCCGg -5'
5506 5' -65.5 NC_001798.1 + 27985 0.67 0.48914
Target:  5'- cCGGCGCuccagCCGUGccGCGC-CCCGGcGCg -3'
miRNA:   3'- -GCCGCG-----GGCGCcuUGCGuGGGCC-CGg -5'
5506 5' -65.5 NC_001798.1 + 18256 0.67 0.488256
Target:  5'- gGGgGCCCGgGGGccagguACGCAUCCuccgcggGGGUa -3'
miRNA:   3'- gCCgCGGGCgCCU------UGCGUGGG-------CCCGg -5'
5506 5' -65.5 NC_001798.1 + 135949 0.67 0.486488
Target:  5'- aGGCGCCCugcuggacGCGGAgcaauacuggagACGCGucgugcgcguauguCCCGGGg- -3'
miRNA:   3'- gCCGCGGG--------CGCCU------------UGCGU--------------GGGCCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.