miRNA display CGI


Results 41 - 60 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 150128 0.66 0.524202
Target:  5'- aGGacgaGgCCGCGGGGCccgaguccgacccGCGCCucuuccgggggCGGGCCg -3'
miRNA:   3'- gCCg---CgGGCGCCUUG-------------CGUGG-----------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 72118 0.66 0.52147
Target:  5'- gGGCGCgCUGaucacccuccucGAACcggcCACCCGGGCCg -3'
miRNA:   3'- gCCGCG-GGCgc----------CUUGc---GUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 23718 0.66 0.519651
Target:  5'- gGGCgGCCCcgGCGGGucgagcuggacgccgACGCGgccUCCGGcGCCu -3'
miRNA:   3'- gCCG-CGGG--CGCCU---------------UGCGU---GGGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 148403 0.66 0.516021
Target:  5'- aGGUGUgCggGCGGggUggGCGCCgGGGCg -3'
miRNA:   3'- gCCGCGgG--CGCCuuG--CGUGGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 72908 0.66 0.516021
Target:  5'- aGG-GCCUGCagacGGAGCGCGCgCuGGUCg -3'
miRNA:   3'- gCCgCGGGCG----CCUUGCGUGgGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 88084 0.66 0.516021
Target:  5'- gCGGCgucuaGCUCGCGGAGgGCGgCCa-GCCg -3'
miRNA:   3'- -GCCG-----CGGGCGCCUUgCGUgGGccCGG- -5'
5506 5' -65.5 NC_001798.1 + 96021 0.66 0.516021
Target:  5'- aCGGCacaCCgGCGGGGCGgGCgggCGGGCg -3'
miRNA:   3'- -GCCGc--GGgCGCCUUGCgUGg--GCCCGg -5'
5506 5' -65.5 NC_001798.1 + 8702 0.66 0.516021
Target:  5'- uCGGCGCCUuaGGAcCGaCugCUGgcGGCCc -3'
miRNA:   3'- -GCCGCGGGcgCCUuGC-GugGGC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 19893 0.66 0.516021
Target:  5'- uCGGCGaccaCCGCGGAca--GCCaGGGCUg -3'
miRNA:   3'- -GCCGCg---GGCGCCUugcgUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 23818 0.66 0.516021
Target:  5'- cCGGCcccccGCCCcCGGGGCGCguGCUguacggCGGGCUg -3'
miRNA:   3'- -GCCG-----CGGGcGCCUUGCG--UGG------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 51002 0.66 0.516021
Target:  5'- --uCGCCCGUGGAggACGaGCCCgaGGGCg -3'
miRNA:   3'- gccGCGGGCGCCU--UGCgUGGG--CCCGg -5'
5506 5' -65.5 NC_001798.1 + 81383 0.66 0.516021
Target:  5'- cCGGCgaGCCCGUccccccuCGCAUgUGGGCCu -3'
miRNA:   3'- -GCCG--CGGGCGccuu---GCGUGgGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 70090 0.66 0.516021
Target:  5'- cCGGuCGCCaUGuCGGAcaGCGCGcuccagguCCCGGcGCCc -3'
miRNA:   3'- -GCC-GCGG-GC-GCCU--UGCGU--------GGGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 71128 0.66 0.506992
Target:  5'- uGGCGCgCGUGcGGACGgACgC-GGCCg -3'
miRNA:   3'- gCCGCGgGCGC-CUUGCgUGgGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 54999 0.66 0.506992
Target:  5'- cCGGCGUCUugccgGCGGGGC-CGCCCu-GCCg -3'
miRNA:   3'- -GCCGCGGG-----CGCCUUGcGUGGGccCGG- -5'
5506 5' -65.5 NC_001798.1 + 75434 0.66 0.506992
Target:  5'- aCGGgGCCCGCacgcauACGCagGCCgGGGUg -3'
miRNA:   3'- -GCCgCGGGCGccu---UGCG--UGGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 121437 0.66 0.506992
Target:  5'- cCGGCGCaCC-CGGAccuccugccGCGCGuCCCcagcgcgggcGGGCUg -3'
miRNA:   3'- -GCCGCG-GGcGCCU---------UGCGU-GGG----------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 145638 0.66 0.506992
Target:  5'- --cCGCCCGgcaGGGGgGC-CCCGGcGCCg -3'
miRNA:   3'- gccGCGGGCg--CCUUgCGuGGGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 54665 0.66 0.506992
Target:  5'- cCGGCaG-CCGCGGcGCGCccGCUCGcGGCUc -3'
miRNA:   3'- -GCCG-CgGGCGCCuUGCG--UGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 69208 0.66 0.506992
Target:  5'- gGGUG-CCGCagggccaaaaGGAGCGC-CCC-GGCCg -3'
miRNA:   3'- gCCGCgGGCG----------CCUUGCGuGGGcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.