miRNA display CGI


Results 21 - 40 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 120343 0.66 0.534268
Target:  5'- --aCGCCC-CGGggUgcagcgccaGCACCUGGGCg -3'
miRNA:   3'- gccGCGGGcGCCuuG---------CGUGGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 83353 0.66 0.534268
Target:  5'- gCGGCgucGCCCGC-GAACauagGCugCgGGGCg -3'
miRNA:   3'- -GCCG---CGGGCGcCUUG----CGugGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 152941 0.66 0.534268
Target:  5'- --aUGCgCGgGGAugGCGgCCGGGaCCg -3'
miRNA:   3'- gccGCGgGCgCCUugCGUgGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 74873 0.66 0.534268
Target:  5'- gGGCaguGCCgGUGGGuCGC-CaCCGGGCg -3'
miRNA:   3'- gCCG---CGGgCGCCUuGCGuG-GGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 56850 0.66 0.534268
Target:  5'- -uGCGUCUGCGug-UGUAUCUGGGCCg -3'
miRNA:   3'- gcCGCGGGCGCcuuGCGUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 145470 0.66 0.534268
Target:  5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3'
miRNA:   3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 145428 0.66 0.534268
Target:  5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3'
miRNA:   3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 45274 0.66 0.53335
Target:  5'- uGGgGgCCGCGGAcaagucggcggACGUGCUCGucucccaGGCCa -3'
miRNA:   3'- gCCgCgGGCGCCU-----------UGCGUGGGC-------CCGG- -5'
5506 5' -65.5 NC_001798.1 + 16220 0.66 0.53335
Target:  5'- gCGcCGCCUGUGGgggggcgGugGgGCCgGGGCCc -3'
miRNA:   3'- -GCcGCGGGCGCC-------UugCgUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 15382 0.66 0.53335
Target:  5'- gGGCG-CgGCGGAgGCGCccaccggACCCGGGg- -3'
miRNA:   3'- gCCGCgGgCGCCU-UGCG-------UGGGCCCgg -5'
5506 5' -65.5 NC_001798.1 + 124167 0.66 0.532433
Target:  5'- gCGuCGCCCcgugcauGUGGuccaauauggcccAGCGCACCCuGGCCg -3'
miRNA:   3'- -GCcGCGGG-------CGCC-------------UUGCGUGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 103041 0.66 0.531516
Target:  5'- uCGGCgGCCuCGCGu--CGCACCCccucgcgcgucgccGGGUCc -3'
miRNA:   3'- -GCCG-CGG-GCGCcuuGCGUGGG--------------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 9134 0.66 0.525114
Target:  5'- aGGUgGUCUGCGGcACGCggGCgCGGcGCCg -3'
miRNA:   3'- gCCG-CGGGCGCCuUGCG--UGgGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 4711 0.66 0.525114
Target:  5'- aCGcCGUCCGCGGcaggcucgucGACGgccuccccggaCGCCgGGGCCg -3'
miRNA:   3'- -GCcGCGGGCGCC----------UUGC-----------GUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 143789 0.66 0.525114
Target:  5'- gGGCGCCC-CaGAGCaUaaagaccagGCCCGGGCg -3'
miRNA:   3'- gCCGCGGGcGcCUUGcG---------UGGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 1765 0.66 0.525114
Target:  5'- aCGGCGCaCUGCacggcGGGCaGCACCuCGcaGGCCa -3'
miRNA:   3'- -GCCGCG-GGCGc----CUUG-CGUGG-GC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 106753 0.66 0.525114
Target:  5'- cCGGaGCCCGCGGGG---AUCCGGaGCUg -3'
miRNA:   3'- -GCCgCGGGCGCCUUgcgUGGGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 123966 0.66 0.525114
Target:  5'- cCGGCGgCCGCau-AUaCugCUGGGCCa -3'
miRNA:   3'- -GCCGCgGGCGccuUGcGugGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 29403 0.66 0.525114
Target:  5'- -cGCGCCgGCGGG--GCGCCgGGGg- -3'
miRNA:   3'- gcCGCGGgCGCCUugCGUGGgCCCgg -5'
5506 5' -65.5 NC_001798.1 + 46894 0.66 0.524202
Target:  5'- uGGUGCuguCCGUuggacaaGGAuCGC-CCUGGGCCc -3'
miRNA:   3'- gCCGCG---GGCG-------CCUuGCGuGGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.