miRNA display CGI


Results 21 - 40 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 23934 0.78 0.094739
Target:  5'- cCGGCGCCCGUGuGGGCGCcgAgCUGGGCg -3'
miRNA:   3'- -GCCGCGGGCGC-CUUGCG--UgGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 31645 0.78 0.097091
Target:  5'- uGGUGUCUGCGagcgcGGACGCGgCCGGGCCc -3'
miRNA:   3'- gCCGCGGGCGC-----CUUGCGUgGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 51285 0.78 0.097091
Target:  5'- gGGC-CCCGCGGGGagGCuACCUGGGCCc -3'
miRNA:   3'- gCCGcGGGCGCCUUg-CG-UGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 24549 0.78 0.09877
Target:  5'- aCGGCGCCgGCGGugguggcggcggccGGCGCGCggaggCGGGCCg -3'
miRNA:   3'- -GCCGCGGgCGCC--------------UUGCGUGg----GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 53890 0.78 0.099255
Target:  5'- aGG-GCCCGCGGAgacguuuGCGCGCCaccuggaccgCGGGCCc -3'
miRNA:   3'- gCCgCGGGCGCCU-------UGCGUGG----------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 135288 0.78 0.099498
Target:  5'- gCGGcCGCCCccuCGGAGCccuGgGCCCGGGCCg -3'
miRNA:   3'- -GCC-GCGGGc--GCCUUG---CgUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 32057 0.77 0.101961
Target:  5'- cCGGCGUCCGCGGGcgccGCGCcCCCGucGGCg -3'
miRNA:   3'- -GCCGCGGGCGCCU----UGCGuGGGC--CCGg -5'
5506 5' -65.5 NC_001798.1 + 136020 0.77 0.101961
Target:  5'- uCGGCGucCCCGUGGAucUGUACCCGcGGCCc -3'
miRNA:   3'- -GCCGC--GGGCGCCUu-GCGUGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 48371 0.77 0.101961
Target:  5'- gGGcCGcCCCGCGGGGCGUGCCgccgcgaccgcaCGGGCCc -3'
miRNA:   3'- gCC-GC-GGGCGCCUUGCGUGG------------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 20342 0.77 0.104482
Target:  5'- uGGCGCagGCGGuugGCGCugCCGGGCg -3'
miRNA:   3'- gCCGCGggCGCCu--UGCGugGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 93279 0.77 0.107061
Target:  5'- cCGGCG-CCGuCGGGgcguaccuggcGCGCGCCgCGGGCCu -3'
miRNA:   3'- -GCCGCgGGC-GCCU-----------UGCGUGG-GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 27253 0.77 0.1097
Target:  5'- aGGCGgCCGCGGGAcCGCAgcCCCGuGGCg -3'
miRNA:   3'- gCCGCgGGCGCCUU-GCGU--GGGC-CCGg -5'
5506 5' -65.5 NC_001798.1 + 23252 0.77 0.1124
Target:  5'- -cGCgGUCCGCGGGGCGUACCCGGaCCc -3'
miRNA:   3'- gcCG-CGGGCGCCUUGCGUGGGCCcGG- -5'
5506 5' -65.5 NC_001798.1 + 43016 0.77 0.115162
Target:  5'- aGGcCGCCCGgGGGgaGCGCGgggcCCCGGGCg -3'
miRNA:   3'- gCC-GCGGGCgCCU--UGCGU----GGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 26353 0.76 0.117987
Target:  5'- gCGGCgGCCCgGCGGAGC-UGCgCGGGCCg -3'
miRNA:   3'- -GCCG-CGGG-CGCCUUGcGUGgGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 23637 0.76 0.117987
Target:  5'- gCGGCGaCCGCGGGccgccuggaGCGC-CgCCGGGCCc -3'
miRNA:   3'- -GCCGCgGGCGCCU---------UGCGuG-GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 34807 0.76 0.120876
Target:  5'- cCGGgGCCC-CGGGgcccccGCGCuccgccggggGCCCGGGCCg -3'
miRNA:   3'- -GCCgCGGGcGCCU------UGCG----------UGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 92560 0.76 0.12205
Target:  5'- gGGCGCgcccgcauuuuggcuUCGCGGAcuACGCGCCCcGGCCc -3'
miRNA:   3'- gCCGCG---------------GGCGCCU--UGCGUGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 66774 0.76 0.12901
Target:  5'- gCGGCGUgggCCGCGGAaucggagucggccgACGCGCgCGGGUCc -3'
miRNA:   3'- -GCCGCG---GGCGCCU--------------UGCGUGgGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 31217 0.76 0.129632
Target:  5'- uGGCGcCCCGCGGAGCagcagcagcggcgGCGCCCcguugcGGGCg -3'
miRNA:   3'- gCCGC-GGGCGCCUUG-------------CGUGGG------CCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.