miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 149986 0.87 0.019901
Target:  5'- gCGGCGCCCGCGG-ACGCcggggcgagcgGCCCGuGGCCg -3'
miRNA:   3'- -GCCGCGGGCGCCuUGCG-----------UGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 71413 0.83 0.039541
Target:  5'- gGGUGCCCGCGcGGACGCcCCCcGGCCa -3'
miRNA:   3'- gCCGCGGGCGC-CUUGCGuGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 129337 0.82 0.044862
Target:  5'- aGGaCGgCCGCGGAGCGCcCgCCGGGCCu -3'
miRNA:   3'- gCC-GCgGGCGCCUUGCGuG-GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 147220 0.82 0.050752
Target:  5'- gGGCcCCCgGCGGAGCGCGggggccccggggcCCCGGGCCg -3'
miRNA:   3'- gCCGcGGG-CGCCUUGCGU-------------GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 16654 0.81 0.05486
Target:  5'- cCGGCGUCCGCGGAACccaaGgGCCCGGGaUCg -3'
miRNA:   3'- -GCCGCGGGCGCCUUG----CgUGGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 27520 0.81 0.059142
Target:  5'- gGGCGCCCGCGGGAaggcaGC-CCCGcGGCg -3'
miRNA:   3'- gCCGCGGGCGCCUUg----CGuGGGC-CCGg -5'
5506 5' -65.5 NC_001798.1 + 28795 0.81 0.059142
Target:  5'- gCGGCGgCgCGCGGGuccuccgccgccGCGgGCCCGGGCCg -3'
miRNA:   3'- -GCCGCgG-GCGCCU------------UGCgUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 4069 0.8 0.068696
Target:  5'- aGGCgGCCCGCGGucgcCGCGggggUCCGGGCCg -3'
miRNA:   3'- gCCG-CGGGCGCCuu--GCGU----GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 7584 0.8 0.0722
Target:  5'- -cGCGCCCGCGuc-CGaCACCCGGGCCc -3'
miRNA:   3'- gcCGCGGGCGCcuuGC-GUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 21819 0.79 0.075874
Target:  5'- gCGGaGCCCGCGGGaugACGCGggcCCCGGGCa -3'
miRNA:   3'- -GCCgCGGGCGCCU---UGCGU---GGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 145915 0.79 0.081724
Target:  5'- cCGGCGggaUCGCGGcgaGACGCAgCCGGGCCc -3'
miRNA:   3'- -GCCGCg--GGCGCC---UUGCGUgGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 39539 0.79 0.081724
Target:  5'- -cGCGCcucgCCGUGGGugGCGCCgGGGCCg -3'
miRNA:   3'- gcCGCG----GGCGCCUugCGUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 104580 0.79 0.083768
Target:  5'- uGGUGUCuCGgGGAACGuCGCCCGgGGCCg -3'
miRNA:   3'- gCCGCGG-GCgCCUUGC-GUGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 108552 0.78 0.088003
Target:  5'- cCGGCGCcuCCGCGcuguuGCGguCCCGGGCCu -3'
miRNA:   3'- -GCCGCG--GGCGCcu---UGCguGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 45083 0.78 0.090196
Target:  5'- cCGGCGCCuCGUgaaGGcGCGCGCCCuGGCCc -3'
miRNA:   3'- -GCCGCGG-GCG---CCuUGCGUGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 27563 0.78 0.090196
Target:  5'- gCGGCGCCCGCGGGGgaGCGgCCGGcuCCg -3'
miRNA:   3'- -GCCGCGGGCGCCUUg-CGUgGGCCc-GG- -5'
5506 5' -65.5 NC_001798.1 + 59773 0.78 0.092214
Target:  5'- cCGGCGguUCCG-GGAACGCgggcgguACCCGGGCCu -3'
miRNA:   3'- -GCCGC--GGGCgCCUUGCG-------UGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 109435 0.78 0.092441
Target:  5'- gCGGCccGCCUGCGGcuggaGGCGCGCCuCGGGCa -3'
miRNA:   3'- -GCCG--CGGGCGCC-----UUGCGUGG-GCCCGg -5'
5506 5' -65.5 NC_001798.1 + 23934 0.78 0.094739
Target:  5'- cCGGCGCCCGUGuGGGCGCcgAgCUGGGCg -3'
miRNA:   3'- -GCCGCGGGCGC-CUUGCG--UgGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 2793 0.78 0.094739
Target:  5'- aGGCGCgggcuCCGCGGcAGCGCcggGCCCaGGGCCc -3'
miRNA:   3'- gCCGCG-----GGCGCC-UUGCG---UGGG-CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.