miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 172 0.69 0.373768
Target:  5'- -cGCGCgCCGCGGGGCuGCcuucCCgCGGGCg -3'
miRNA:   3'- gcCGCG-GGCGCCUUG-CGu---GG-GCCCGg -5'
5506 5' -65.5 NC_001798.1 + 438 0.71 0.26055
Target:  5'- cCGcGCGCCaCGgGGcuGCGguCCCGcGGCCg -3'
miRNA:   3'- -GC-CGCGG-GCgCCu-UGCguGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 589 0.68 0.412853
Target:  5'- -cGCuCCUGCGGGG-GgGCUCGGGCCa -3'
miRNA:   3'- gcCGcGGGCGCCUUgCgUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 1217 0.68 0.429178
Target:  5'- cCGcGCgGCCCGCGGccgacgcccAGCGUAUCugcgggggCGGGCCc -3'
miRNA:   3'- -GC-CG-CGGGCGCC---------UUGCGUGG--------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 1323 0.7 0.329597
Target:  5'- cCGcGCGCagaacucccgCCGCGGccCGCGCagcuccgCCGGGCCg -3'
miRNA:   3'- -GC-CGCG----------GGCGCCuuGCGUG-------GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 1402 0.68 0.396917
Target:  5'- aCGG-GCCgcaGCGG--CGCGCCCaGGCCc -3'
miRNA:   3'- -GCCgCGGg--CGCCuuGCGUGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 1485 0.69 0.33727
Target:  5'- gGGCGCCaugGCGucgccCGCGCCCGaGGCg -3'
miRNA:   3'- gCCGCGGg--CGCcuu--GCGUGGGC-CCGg -5'
5506 5' -65.5 NC_001798.1 + 1622 0.67 0.48914
Target:  5'- uGGC-CCCGCGGcagaGGCGCAgCgGcGGCg -3'
miRNA:   3'- gCCGcGGGCGCC----UUGCGUgGgC-CCGg -5'
5506 5' -65.5 NC_001798.1 + 1765 0.66 0.525114
Target:  5'- aCGGCGCaCUGCacggcGGGCaGCACCuCGcaGGCCa -3'
miRNA:   3'- -GCCGCG-GGCGc----CUUG-CGUGG-GC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 1805 0.69 0.33727
Target:  5'- aGGCGUgcugCCGCGaGAccACGgGCCCgucggcGGGCCa -3'
miRNA:   3'- gCCGCG----GGCGC-CU--UGCgUGGG------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 2014 0.7 0.301492
Target:  5'- aGGCGgCCGUGGcGgGCccgcagagccgguuGCCCaGGGCCg -3'
miRNA:   3'- gCCGCgGGCGCCuUgCG--------------UGGG-CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 2100 0.74 0.176894
Target:  5'- gGGgGCCCGCccccGGCGCgGCCCGcGGCCa -3'
miRNA:   3'- gCCgCGGGCGcc--UUGCG-UGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 2213 0.75 0.139636
Target:  5'- gCGGCGCa-GCGGGcccgagGCGCGCagCGGGCCg -3'
miRNA:   3'- -GCCGCGggCGCCU------UGCGUGg-GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 2277 0.74 0.168796
Target:  5'- gCGGCGCagcgCGCGGccagcgaggccAGCGCGCgCGGGUCg -3'
miRNA:   3'- -GCCGCGg---GCGCC-----------UUGCGUGgGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 2370 0.76 0.129632
Target:  5'- uCGGCcacgGCCCGCGGGGCGCAguaggccUCCaGGGCg -3'
miRNA:   3'- -GCCG----CGGGCGCCUUGCGU-------GGG-CCCGg -5'
5506 5' -65.5 NC_001798.1 + 2417 0.68 0.429178
Target:  5'- gGGCGCCgGCGuGugGCuggGCCCcGGCg -3'
miRNA:   3'- gCCGCGGgCGCcUugCG---UGGGcCCGg -5'
5506 5' -65.5 NC_001798.1 + 2481 0.71 0.26636
Target:  5'- uCGGCggGCCgGCGGGucaGCGCCgCGGGgCg -3'
miRNA:   3'- -GCCG--CGGgCGCCUug-CGUGG-GCCCgG- -5'
5506 5' -65.5 NC_001798.1 + 2527 0.69 0.343644
Target:  5'- gCGGCGUCgGCGGGgcgggggGCGCGgccCCCGcgggaggggcGGCCg -3'
miRNA:   3'- -GCCGCGGgCGCCU-------UGCGU---GGGC----------CCGG- -5'
5506 5' -65.5 NC_001798.1 + 2584 0.7 0.31264
Target:  5'- gGGCGUCCGCgcggcucuucuucggGGGGCGCggggcgccGCCCGGcggcGCCc -3'
miRNA:   3'- gCCGCGGGCG---------------CCUUGCG--------UGGGCC----CGG- -5'
5506 5' -65.5 NC_001798.1 + 2793 0.78 0.094739
Target:  5'- aGGCGCgggcuCCGCGGcAGCGCcggGCCCaGGGCCc -3'
miRNA:   3'- gCCGCG-----GGCGCC-UUGCG---UGGG-CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.