miRNA display CGI


Results 21 - 40 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 2853 0.7 0.316648
Target:  5'- aCGGCGgCCacgGCGGccuCGCugCCGccGGCCa -3'
miRNA:   3'- -GCCGCgGG---CGCCuu-GCGugGGC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 2988 0.74 0.184047
Target:  5'- gCGGCcgGCCCGCGGGccccgggcgcggggGCGCGgC-GGGCCg -3'
miRNA:   3'- -GCCG--CGGGCGCCU--------------UGCGUgGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 3257 0.73 0.189689
Target:  5'- gCGGCGCCguagccgGCGGGcaccGCGCGCUCGucGGCCg -3'
miRNA:   3'- -GCCGCGGg------CGCCU----UGCGUGGGC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 3574 0.67 0.445877
Target:  5'- gGGCacgGCCCGCGccACGCugCCGGa-- -3'
miRNA:   3'- gCCG---CGGGCGCcuUGCGugGGCCcgg -5'
5506 5' -65.5 NC_001798.1 + 3625 0.66 0.537945
Target:  5'- -cGCGCCCGagaucCGGAagcaggccugguccaGCGCcacgucCCCGGGCg -3'
miRNA:   3'- gcCGCGGGC-----GCCU---------------UGCGu-----GGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 3772 0.75 0.139636
Target:  5'- gGGCGCCCacaCGGGcgccgGgGCGCCCGaGGCCu -3'
miRNA:   3'- gCCGCGGGc--GCCU-----UgCGUGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 3811 0.67 0.479448
Target:  5'- cCGG-GCCCGCGccuccuccgccucGGGCGCcCCCcagaGGCCg -3'
miRNA:   3'- -GCCgCGGGCGC-------------CUUGCGuGGGc---CCGG- -5'
5506 5' -65.5 NC_001798.1 + 3885 0.75 0.139636
Target:  5'- -cGCGCCCcggggGCGGGGgGCcggcCCCGGGCCa -3'
miRNA:   3'- gcCGCGGG-----CGCCUUgCGu---GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 3943 0.67 0.480326
Target:  5'- gCGGUaGCgCGCGuaGAAgGCGCCgGaGGCCg -3'
miRNA:   3'- -GCCG-CGgGCGC--CUUgCGUGGgC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 3977 0.7 0.323415
Target:  5'- uCGGCGUCCaGCucGAC-CGCCgGGGCCg -3'
miRNA:   3'- -GCCGCGGG-CGccUUGcGUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 4006 0.68 0.429178
Target:  5'- cCGGCcgugaagcgGCCCGUGGcguCGCGgCC-GGCCa -3'
miRNA:   3'- -GCCG---------CGGGCGCCuu-GCGUgGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 4069 0.8 0.068696
Target:  5'- aGGCgGCCCGCGGucgcCGCGggggUCCGGGCCg -3'
miRNA:   3'- gCCG-CGGGCGCCuu--GCGU----GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 4119 0.69 0.33727
Target:  5'- gGGCggGCUCGgcCGGGGCGcCGCCCccgGGGCCc -3'
miRNA:   3'- gCCG--CGGGC--GCCUUGC-GUGGG---CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 4213 0.68 0.396917
Target:  5'- gCGGCGCUgGCgGGGGCGCGggCGGcGUCg -3'
miRNA:   3'- -GCCGCGGgCG-CCUUGCGUggGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 4355 0.75 0.153589
Target:  5'- cCGaGCGCCgGCGGGggGCGCGCCgGcGGCg -3'
miRNA:   3'- -GC-CGCGGgCGCCU--UGCGUGGgC-CCGg -5'
5506 5' -65.5 NC_001798.1 + 4402 0.68 0.396917
Target:  5'- uGGUGUCgGCGGGGCGC-CggGGGUCg -3'
miRNA:   3'- gCCGCGGgCGCCUUGCGuGggCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 4578 0.69 0.358852
Target:  5'- gGGgGUCCGCGGcggagAAgGCGagCGGGCCg -3'
miRNA:   3'- gCCgCGGGCGCC-----UUgCGUggGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 4711 0.66 0.525114
Target:  5'- aCGcCGUCCGCGGcaggcucgucGACGgccuccccggaCGCCgGGGCCg -3'
miRNA:   3'- -GCcGCGGGCGCC----------UUGC-----------GUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 5740 0.7 0.330289
Target:  5'- cCGGgGCCCGCGucaucccGCGCuccGCCCcaaagggggcgGGGCCg -3'
miRNA:   3'- -GCCgCGGGCGCcu-----UGCG---UGGG-----------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 5878 0.67 0.480326
Target:  5'- cCGGgGCCCGCGucaucccgcGGGCucCGCCCcgaggcGGGCCc -3'
miRNA:   3'- -GCCgCGGGCGC---------CUUGc-GUGGG------CCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.