miRNA display CGI


Results 21 - 40 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 150221 0.68 0.389098
Target:  5'- uGGUGCCgCGgGGGAC---CCCGGGUCc -3'
miRNA:   3'- gCCGCGG-GCgCCUUGcguGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 150128 0.66 0.524202
Target:  5'- aGGacgaGgCCGCGGGGCccgaguccgacccGCGCCucuuccgggggCGGGCCg -3'
miRNA:   3'- gCCg---CgGGCGCCUUG-------------CGUGG-----------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 150044 0.68 0.396917
Target:  5'- cCGGgGCCCgGCGcGGCGcCGCCCucuuGGCCc -3'
miRNA:   3'- -GCCgCGGG-CGCcUUGC-GUGGGc---CCGG- -5'
5506 5' -65.5 NC_001798.1 + 149986 0.87 0.019901
Target:  5'- gCGGCGCCCGCGG-ACGCcggggcgagcgGCCCGuGGCCg -3'
miRNA:   3'- -GCCGCGGGCGCCuUGCG-----------UGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 149729 0.71 0.26636
Target:  5'- uCGGCcCCCGCGGcgcAGCaGCGCggGGGCCg -3'
miRNA:   3'- -GCCGcGGGCGCC---UUG-CGUGggCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 149662 0.71 0.26055
Target:  5'- gGGCGCCggguCGCGGGcccCGgGCUCGgGGCCg -3'
miRNA:   3'- gCCGCGG----GCGCCUu--GCgUGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 149297 0.69 0.344357
Target:  5'- uGGCGCgaccggaggCCGUGGAaguccaGCGCGCCCaccaGGGUg -3'
miRNA:   3'- gCCGCG---------GGCGCCU------UGCGUGGG----CCCGg -5'
5506 5' -65.5 NC_001798.1 + 148403 0.66 0.516021
Target:  5'- aGGUGUgCggGCGGggUggGCGCCgGGGCg -3'
miRNA:   3'- gCCGCGgG--CGCCuuG--CGUGGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 147514 0.68 0.408031
Target:  5'- gGGCGCCUGCgugugucucgugugaGaGAGCGCGCCCcucgaacGCCg -3'
miRNA:   3'- gCCGCGGGCG---------------C-CUUGCGUGGGcc-----CGG- -5'
5506 5' -65.5 NC_001798.1 + 147266 0.68 0.412853
Target:  5'- gCGGCGUuuCCGCGuucCGUuucuucucccuCCCGGGCCg -3'
miRNA:   3'- -GCCGCG--GGCGCcuuGCGu----------GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 147220 0.82 0.050752
Target:  5'- gGGCcCCCgGCGGAGCGCGggggccccggggcCCCGGGCCg -3'
miRNA:   3'- gCCGcGGG-CGCCUUGCGU-------------GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 147177 0.7 0.302139
Target:  5'- cCGGCGCCgGgCGGAAgGCgucccccGCCCGgcgguccGGCCc -3'
miRNA:   3'- -GCCGCGGgC-GCCUUgCG-------UGGGC-------CCGG- -5'
5506 5' -65.5 NC_001798.1 + 146634 0.7 0.316648
Target:  5'- aGGCcCCCGCGG---GCAUCCGGcgGCCg -3'
miRNA:   3'- gCCGcGGGCGCCuugCGUGGGCC--CGG- -5'
5506 5' -65.5 NC_001798.1 + 146556 0.71 0.277689
Target:  5'- -cGUGgCCGCGGGccagcagACGgGCCgCGGGCCa -3'
miRNA:   3'- gcCGCgGGCGCCU-------UGCgUGG-GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 146449 0.74 0.176894
Target:  5'- cCGGaGCCCGCGGccgcagccgAGCaGCGCCgCGGGCUc -3'
miRNA:   3'- -GCCgCGGGCGCC---------UUG-CGUGG-GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 145915 0.79 0.081724
Target:  5'- cCGGCGggaUCGCGGcgaGACGCAgCCGGGCCc -3'
miRNA:   3'- -GCCGCg--GGCGCC---UUGCGUgGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 145638 0.66 0.506992
Target:  5'- --cCGCCCGgcaGGGGgGC-CCCGGcGCCg -3'
miRNA:   3'- gccGCGGGCg--CCUUgCGuGGGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 145547 0.7 0.290653
Target:  5'- cCGGcCGCCCGCGu--CGCGCC-GGcGCCc -3'
miRNA:   3'- -GCC-GCGGGCGCcuuGCGUGGgCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 145470 0.66 0.534268
Target:  5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3'
miRNA:   3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 145428 0.66 0.534268
Target:  5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3'
miRNA:   3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.