miRNA display CGI


Results 1 - 20 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 154510 0.69 0.373768
Target:  5'- -cGCGCgCCGCGGGGCuGCcuucCCgCGGGCg -3'
miRNA:   3'- gcCGCG-GGCGCCUUG-CGu---GG-GCCCGg -5'
5506 5' -65.5 NC_001798.1 + 154274 0.68 0.420968
Target:  5'- ---gGCUgGCGu-GCGCAgCCCGGGCCg -3'
miRNA:   3'- gccgCGGgCGCcuUGCGU-GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 154169 0.7 0.296992
Target:  5'- uCGGCguagGCCCGgagcCGGAGCGCGUCgGGGCg -3'
miRNA:   3'- -GCCG----CGGGC----GCCUUGCGUGGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 154077 0.69 0.348661
Target:  5'- gGGCGCggcacggcuggagCGcCGGGGCGCGgCCGGcGCCg -3'
miRNA:   3'- gCCGCGg------------GC-GCCUUGCGUgGGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 154027 0.71 0.278296
Target:  5'- gGGaGUCUGCgguugGGAGCGCGCCgGGGCg -3'
miRNA:   3'- gCCgCGGGCG-----CCUUGCGUGGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 153652 0.7 0.316648
Target:  5'- aGGCGuaccuuCCCGCGcGGCGCGuCCgCGGGCg -3'
miRNA:   3'- gCCGC------GGGCGCcUUGCGU-GG-GCCCGg -5'
5506 5' -65.5 NC_001798.1 + 153386 0.73 0.20329
Target:  5'- gCGGCGCCggaaccgguCGCGGucggcccgcucGCGCGCCCaggacccccgucGGGCCa -3'
miRNA:   3'- -GCCGCGG---------GCGCCu----------UGCGUGGG------------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 153306 0.69 0.366257
Target:  5'- uGG-GCCCG-GGcuCGgGCUCGGGCCc -3'
miRNA:   3'- gCCgCGGGCgCCuuGCgUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 153227 0.69 0.33727
Target:  5'- aCGGCccggGCCCGCGGcGGCGgaggACCCGcGcGCCg -3'
miRNA:   3'- -GCCG----CGGGCGCC-UUGCg---UGGGC-C-CGG- -5'
5506 5' -65.5 NC_001798.1 + 153058 0.71 0.26636
Target:  5'- cCGGCGCCgCccccuggggcggGCGGAGCgGCggggcgGCgCCGGGCCc -3'
miRNA:   3'- -GCCGCGG-G------------CGCCUUG-CG------UG-GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 153009 0.72 0.217729
Target:  5'- gGGCGgUCGcCGGGGCGgAgUCCGGGCCc -3'
miRNA:   3'- gCCGCgGGC-GCCUUGCgU-GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 152941 0.66 0.534268
Target:  5'- --aUGCgCGgGGAugGCGgCCGGGaCCg -3'
miRNA:   3'- gccGCGgGCgCCUugCGUgGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 152317 0.68 0.420968
Target:  5'- aCGGCgGCCCGCGGucucucucUugCCGGGUUu -3'
miRNA:   3'- -GCCG-CGGGCGCCuugc----GugGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 152252 0.69 0.351552
Target:  5'- cCGGgGUCCGCccgGGAGCucGUG-CCGGGCCg -3'
miRNA:   3'- -GCCgCGGGCG---CCUUG--CGUgGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 151582 0.66 0.542554
Target:  5'- uCGGCGggCGUGGGGCugcccugGCGCucggccgggggCCGGGCCg -3'
miRNA:   3'- -GCCGCggGCGCCUUG-------CGUG-----------GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 150848 0.67 0.437482
Target:  5'- gGGCGCCgGuCGGGuCGCGgC-GGGCUg -3'
miRNA:   3'- gCCGCGGgC-GCCUuGCGUgGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 150696 0.69 0.381381
Target:  5'- cCGcGCGCCUGC---GCGCGCCCcccgccGGCCg -3'
miRNA:   3'- -GC-CGCGGGCGccuUGCGUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 150568 0.7 0.323415
Target:  5'- cCGGgGCCCGCGGGGCgGCGCggagacggCGGGg- -3'
miRNA:   3'- -GCCgCGGGCGCCUUG-CGUGg-------GCCCgg -5'
5506 5' -65.5 NC_001798.1 + 150424 0.66 0.501607
Target:  5'- gCGGCGgCggCGCGGGGCGgACuCCGGacgcgcggggcgacgGCCg -3'
miRNA:   3'- -GCCGCgG--GCGCCUUGCgUG-GGCC---------------CGG- -5'
5506 5' -65.5 NC_001798.1 + 150345 0.67 0.462933
Target:  5'- cCGGgGCgCGCGGuGCGCGuCCaccggcacggCGGGCg -3'
miRNA:   3'- -GCCgCGgGCGCCuUGCGU-GG----------GCCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.