miRNA display CGI


Results 41 - 60 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 6061 0.69 0.351552
Target:  5'- cCGGCGgCgaGCGGGgcaccgACGCACCCGGaUCg -3'
miRNA:   3'- -GCCGCgGg-CGCCU------UGCGUGGGCCcGG- -5'
5506 5' -65.5 NC_001798.1 + 6218 0.67 0.454362
Target:  5'- aCGGUGaCCCGgGGGGC-CGgCCGGGg- -3'
miRNA:   3'- -GCCGC-GGGCgCCUUGcGUgGGCCCgg -5'
5506 5' -65.5 NC_001798.1 + 6265 0.7 0.290026
Target:  5'- aCGG-GCCgGgGGGACGgGCCggggggaCGGGCCg -3'
miRNA:   3'- -GCCgCGGgCgCCUUGCgUGG-------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 6304 0.7 0.290026
Target:  5'- aCGG-GCCgGgGGGACGgGCCggggggaCGGGCCg -3'
miRNA:   3'- -GCCgCGGgCgCCUUGCgUGG-------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 6343 0.7 0.290026
Target:  5'- aCGG-GCCgGgGGGACGgGCCggggggaCGGGCCg -3'
miRNA:   3'- -GCCgCGGgCgCCUUGCgUGG-------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 7584 0.8 0.0722
Target:  5'- -cGCGCCCGCGuc-CGaCACCCGGGCCc -3'
miRNA:   3'- gcCGCGGGCGCcuuGC-GUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 7694 0.69 0.354459
Target:  5'- uGGCgcaccugcagaugcuGCCCGCGG-AC-CA-CCGGGCCu -3'
miRNA:   3'- gCCG---------------CGGGCGCCuUGcGUgGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 8702 0.66 0.516021
Target:  5'- uCGGCGCCUuaGGAcCGaCugCUGgcGGCCc -3'
miRNA:   3'- -GCCGCGGGcgCCUuGC-GugGGC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 8818 0.72 0.237801
Target:  5'- gCGGCaCCgacgCGCuGGAACGCACCgagucuuggucggCGGGCCg -3'
miRNA:   3'- -GCCGcGG----GCG-CCUUGCGUGG-------------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 9134 0.66 0.525114
Target:  5'- aGGUgGUCUGCGGcACGCggGCgCGGcGCCg -3'
miRNA:   3'- gCCG-CGGGCGCCuUGCG--UGgGCC-CGG- -5'
5506 5' -65.5 NC_001798.1 + 9652 0.68 0.420968
Target:  5'- aGGCGCa-GCGGGccGCGCGCggaGGGCg -3'
miRNA:   3'- gCCGCGggCGCCU--UGCGUGgg-CCCGg -5'
5506 5' -65.5 NC_001798.1 + 13643 0.67 0.471589
Target:  5'- uGGCGCagacgaCGCGGAgucccaccGCGacaACUagcaGGGCCg -3'
miRNA:   3'- gCCGCGg-----GCGCCU--------UGCg--UGGg---CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 15382 0.66 0.53335
Target:  5'- gGGCG-CgGCGGAgGCGCccaccggACCCGGGg- -3'
miRNA:   3'- gCCGCgGgCGCCU-UGCG-------UGGGCCCgg -5'
5506 5' -65.5 NC_001798.1 + 16080 0.7 0.309989
Target:  5'- gGGCGUCUGUGGGggcagacaGCGCuCCCGGaaacgcagGCCa -3'
miRNA:   3'- gCCGCGGGCGCCU--------UGCGuGGGCC--------CGG- -5'
5506 5' -65.5 NC_001798.1 + 16174 0.76 0.136334
Target:  5'- gGGCgGCCCGCGGGgaccggggggACGCA--CGGGCCg -3'
miRNA:   3'- gCCG-CGGGCGCCU----------UGCGUggGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 16220 0.66 0.53335
Target:  5'- gCGcCGCCUGUGGgggggcgGugGgGCCgGGGCCc -3'
miRNA:   3'- -GCcGCGGGCGCC-------UugCgUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 16612 0.72 0.233036
Target:  5'- aGGgGCUCGUgacGGAcgACGCGCCgGGGCa -3'
miRNA:   3'- gCCgCGGGCG---CCU--UGCGUGGgCCCGg -5'
5506 5' -65.5 NC_001798.1 + 16654 0.81 0.05486
Target:  5'- cCGGCGUCCGCGGAACccaaGgGCCCGGGaUCg -3'
miRNA:   3'- -GCCGCGGGCGCCUUG----CgUGGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 16997 0.66 0.49803
Target:  5'- gCGGCGCUUggGCGGAGCGCcGCgUcaaagguaaGGGCUu -3'
miRNA:   3'- -GCCGCGGG--CGCCUUGCG-UGgG---------CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 17147 0.69 0.354459
Target:  5'- aGGCGCgauuCCGCGuGcgucggaaacucgucGACGUguACCUGGGCCu -3'
miRNA:   3'- gCCGCG----GGCGC-C---------------UUGCG--UGGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.