miRNA display CGI


Results 41 - 60 of 505 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 2370 0.76 0.129632
Target:  5'- uCGGCcacgGCCCGCGGGGCGCAguaggccUCCaGGGCg -3'
miRNA:   3'- -GCCG----CGGGCGCCUUGCGU-------GGG-CCCGg -5'
5506 5' -65.5 NC_001798.1 + 109702 0.76 0.129944
Target:  5'- gGcGCGCCCucggccgagcaGCgGGAACGCGCCCgccgGGGCCu -3'
miRNA:   3'- gC-CGCGGG-----------CG-CCUUGCGUGGG----CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 78133 0.76 0.129944
Target:  5'- gGGCGCCUgGCGGAcgacaugacgaGCGUGCCCGGccugcGCCg -3'
miRNA:   3'- gCCGCGGG-CGCCU-----------UGCGUGGGCC-----CGG- -5'
5506 5' -65.5 NC_001798.1 + 57725 0.76 0.129944
Target:  5'- cCGGCcCCCGCGaaggaccgguGGGCGCGCCCGGcGCa -3'
miRNA:   3'- -GCCGcGGGCGC----------CUUGCGUGGGCC-CGg -5'
5506 5' -65.5 NC_001798.1 + 16174 0.76 0.136334
Target:  5'- gGGCgGCCCGCGGGgaccggggggACGCA--CGGGCCg -3'
miRNA:   3'- gCCG-CGGGCGCCU----------UGCGUggGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 91503 0.76 0.136334
Target:  5'- cCGGCucuuaCCgGCGGAccCGCGCCCGGGUCc -3'
miRNA:   3'- -GCCGc----GGgCGCCUu-GCGUGGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 24048 0.76 0.136334
Target:  5'- uGGCGCCCGgGGAcgugGCGCuggaCCaGGCCu -3'
miRNA:   3'- gCCGCGGGCgCCU----UGCGug--GGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 3772 0.75 0.139636
Target:  5'- gGGCGCCCacaCGGGcgccgGgGCGCCCGaGGCCu -3'
miRNA:   3'- gCCGCGGGc--GCCU-----UgCGUGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 2213 0.75 0.139636
Target:  5'- gCGGCGCa-GCGGGcccgagGCGCGCagCGGGCCg -3'
miRNA:   3'- -GCCGCGggCGCCU------UGCGUGg-GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 3885 0.75 0.139636
Target:  5'- -cGCGCCCcggggGCGGGGgGCcggcCCCGGGCCa -3'
miRNA:   3'- gcCGCGGG-----CGCCUUgCGu---GGGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 75916 0.75 0.140641
Target:  5'- aGGCcuuagacgcccucGCCCGCGGggUcgacucggucucgcaGCGCgCCGGGCCc -3'
miRNA:   3'- gCCG-------------CGGGCGCCuuG---------------CGUG-GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 58419 0.75 0.146461
Target:  5'- aGGCGgCCaGCGcGAGCGCGCCCGcaaaGGUCa -3'
miRNA:   3'- gCCGCgGG-CGC-CUUGCGUGGGC----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 128932 0.75 0.146461
Target:  5'- cCGGCGUgCGCuacuuCGCGCCCGGGCg -3'
miRNA:   3'- -GCCGCGgGCGccuu-GCGUGGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 77675 0.75 0.146461
Target:  5'- aCGGCGaagaUgGCGGcccAGCGCGCCCGGGgCa -3'
miRNA:   3'- -GCCGCg---GgCGCC---UUGCGUGGGCCCgG- -5'
5506 5' -65.5 NC_001798.1 + 78554 0.75 0.149987
Target:  5'- uGGCggGCCUGCGGGaggcgcuggccGCGCGCgagcgCCGGGCCc -3'
miRNA:   3'- gCCG--CGGGCGCCU-----------UGCGUG-----GGCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 24716 0.75 0.149987
Target:  5'- cCGGgGCCCGCGG-GCGCGgCCGccccGCCg -3'
miRNA:   3'- -GCCgCGGGCGCCuUGCGUgGGCc---CGG- -5'
5506 5' -65.5 NC_001798.1 + 36304 0.75 0.149987
Target:  5'- gGGUGUggCgGCGGGGCGCggGCCgGGGCCg -3'
miRNA:   3'- gCCGCG--GgCGCCUUGCG--UGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 79388 0.75 0.149987
Target:  5'- gGGCGCgggCGCGGAGucCGCGCCCGcGCCc -3'
miRNA:   3'- gCCGCGg--GCGCCUU--GCGUGGGCcCGG- -5'
5506 5' -65.5 NC_001798.1 + 73310 0.75 0.151419
Target:  5'- cCGGCccacaggacacgcagGCCCGCGcGccgucGACGCGCCCggcGGGCCg -3'
miRNA:   3'- -GCCG---------------CGGGCGC-C-----UUGCGUGGG---CCCGG- -5'
5506 5' -65.5 NC_001798.1 + 25462 0.75 0.153226
Target:  5'- gGcGCGCCCGCcgccuucGGcccgcuGCGCGCCuCGGGCCc -3'
miRNA:   3'- gC-CGCGGGCG-------CCu-----UGCGUGG-GCCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.