miRNA display CGI


Results 41 - 60 of 505 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5506 5' -65.5 NC_001798.1 + 115409 0.66 0.543478
Target:  5'- gCGGCuGUCCaUGGAgaACGCGgUCGGGaCCg -3'
miRNA:   3'- -GCCG-CGGGcGCCU--UGCGUgGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 42747 0.66 0.543478
Target:  5'- cCGuCGCCCGCacagacGGGCgGCGCgCgGGGCCg -3'
miRNA:   3'- -GCcGCGGGCGc-----CUUG-CGUG-GgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 75689 0.66 0.547176
Target:  5'- aCGGgGaCCuCGCGGAccuggaucugcagcuGCGCGccgcCCCGccGGCCa -3'
miRNA:   3'- -GCCgC-GG-GCGCCU---------------UGCGU----GGGC--CCGG- -5'
5506 5' -65.5 NC_001798.1 + 115893 0.66 0.547176
Target:  5'- cCGcCGUCCGCGGGGCGUucgaggaccgcagcuACCCGG-Cg -3'
miRNA:   3'- -GCcGCGGGCGCCUUGCG---------------UGGGCCcGg -5'
5506 5' -65.5 NC_001798.1 + 65146 0.66 0.547176
Target:  5'- aCGGCGUC-GCGGAgccgcccaaagucaaACGUcuGCCuggagacgcauCGGGCCa -3'
miRNA:   3'- -GCCGCGGgCGCCU---------------UGCG--UGG-----------GCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 152941 0.66 0.534268
Target:  5'- --aUGCgCGgGGAugGCGgCCGGGaCCg -3'
miRNA:   3'- gccGCGgGCgCCUugCGUgGGCCC-GG- -5'
5506 5' -65.5 NC_001798.1 + 74873 0.66 0.534268
Target:  5'- gGGCaguGCCgGUGGGuCGC-CaCCGGGCg -3'
miRNA:   3'- gCCG---CGGgCGCCUuGCGuG-GGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 16220 0.66 0.53335
Target:  5'- gCGcCGCCUGUGGgggggcgGugGgGCCgGGGCCc -3'
miRNA:   3'- -GCcGCGGGCGCC-------UugCgUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 45274 0.66 0.53335
Target:  5'- uGGgGgCCGCGGAcaagucggcggACGUGCUCGucucccaGGCCa -3'
miRNA:   3'- gCCgCgGGCGCCU-----------UGCGUGGGC-------CCGG- -5'
5506 5' -65.5 NC_001798.1 + 135429 0.66 0.534268
Target:  5'- uCGGUgaaguuugcgGUCUGCGGcg-GCACCgGGGCUg -3'
miRNA:   3'- -GCCG----------CGGGCGCCuugCGUGGgCCCGG- -5'
5506 5' -65.5 NC_001798.1 + 17814 0.66 0.534268
Target:  5'- uGaGCGCuCCGUGGAuCGCgaaucccaGCCCGGucaccaguuuuGCCa -3'
miRNA:   3'- gC-CGCG-GGCGCCUuGCG--------UGGGCC-----------CGG- -5'
5506 5' -65.5 NC_001798.1 + 62284 0.66 0.534268
Target:  5'- gGGCgGCCCgGCgGGAGCGCGCCaacuCGcGCUc -3'
miRNA:   3'- gCCG-CGGG-CG-CCUUGCGUGG----GCcCGG- -5'
5506 5' -65.5 NC_001798.1 + 72992 0.66 0.534268
Target:  5'- uGGC-CCaCGCGaccgaGGACGCGCCCcccagcccGGCCg -3'
miRNA:   3'- gCCGcGG-GCGC-----CUUGCGUGGGc-------CCGG- -5'
5506 5' -65.5 NC_001798.1 + 92961 0.66 0.534268
Target:  5'- uGcGUGCCCGgaaCGuGGACGCcgugGCCCGcgcGGCCg -3'
miRNA:   3'- gC-CGCGGGC---GC-CUUGCG----UGGGC---CCGG- -5'
5506 5' -65.5 NC_001798.1 + 102517 0.66 0.534268
Target:  5'- gGGUGUCCGUaGGccacCGUcCCCGcGGCCg -3'
miRNA:   3'- gCCGCGGGCG-CCuu--GCGuGGGC-CCGG- -5'
5506 5' -65.5 NC_001798.1 + 110284 0.66 0.534268
Target:  5'- uCGGC-CUCGUGGGggccguguuucuGCGCuacACCCcGGCCg -3'
miRNA:   3'- -GCCGcGGGCGCCU------------UGCG---UGGGcCCGG- -5'
5506 5' -65.5 NC_001798.1 + 120343 0.66 0.534268
Target:  5'- --aCGCCC-CGGggUgcagcgccaGCACCUGGGCg -3'
miRNA:   3'- gccGCGGGcGCCuuG---------CGUGGGCCCGg -5'
5506 5' -65.5 NC_001798.1 + 145428 0.66 0.534268
Target:  5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3'
miRNA:   3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 145470 0.66 0.534268
Target:  5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3'
miRNA:   3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5'
5506 5' -65.5 NC_001798.1 + 56850 0.66 0.534268
Target:  5'- -uGCGUCUGCGug-UGUAUCUGGGCCg -3'
miRNA:   3'- gcCGCGGGCGCcuuGCGUGGGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.