Results 41 - 60 of 505 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5506 | 5' | -65.5 | NC_001798.1 | + | 81083 | 0.66 | 0.543478 |
Target: 5'- uGGCuaCCGCGGGggACGUuCUCGcGGCg -3' miRNA: 3'- gCCGcgGGCGCCU--UGCGuGGGC-CCGg -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 115409 | 0.66 | 0.543478 |
Target: 5'- gCGGCuGUCCaUGGAgaACGCGgUCGGGaCCg -3' miRNA: 3'- -GCCG-CGGGcGCCU--UGCGUgGGCCC-GG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 42747 | 0.66 | 0.543478 |
Target: 5'- cCGuCGCCCGCacagacGGGCgGCGCgCgGGGCCg -3' miRNA: 3'- -GCcGCGGGCGc-----CUUG-CGUG-GgCCCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 75689 | 0.66 | 0.547176 |
Target: 5'- aCGGgGaCCuCGCGGAccuggaucugcagcuGCGCGccgcCCCGccGGCCa -3' miRNA: 3'- -GCCgC-GG-GCGCCU---------------UGCGU----GGGC--CCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 115893 | 0.66 | 0.547176 |
Target: 5'- cCGcCGUCCGCGGGGCGUucgaggaccgcagcuACCCGG-Cg -3' miRNA: 3'- -GCcGCGGGCGCCUUGCG---------------UGGGCCcGg -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 74873 | 0.66 | 0.534268 |
Target: 5'- gGGCaguGCCgGUGGGuCGC-CaCCGGGCg -3' miRNA: 3'- gCCG---CGGgCGCCUuGCGuG-GGCCCGg -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 56850 | 0.66 | 0.534268 |
Target: 5'- -uGCGUCUGCGug-UGUAUCUGGGCCg -3' miRNA: 3'- gcCGCGGGCGCcuuGCGUGGGCCCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 15382 | 0.66 | 0.53335 |
Target: 5'- gGGCG-CgGCGGAgGCGCccaccggACCCGGGg- -3' miRNA: 3'- gCCGCgGgCGCCU-UGCG-------UGGGCCCgg -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 16220 | 0.66 | 0.53335 |
Target: 5'- gCGcCGCCUGUGGgggggcgGugGgGCCgGGGCCc -3' miRNA: 3'- -GCcGCGGGCGCC-------UugCgUGGgCCCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 45274 | 0.66 | 0.53335 |
Target: 5'- uGGgGgCCGCGGAcaagucggcggACGUGCUCGucucccaGGCCa -3' miRNA: 3'- gCCgCgGGCGCCU-----------UGCGUGGGC-------CCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 135429 | 0.66 | 0.534268 |
Target: 5'- uCGGUgaaguuugcgGUCUGCGGcg-GCACCgGGGCUg -3' miRNA: 3'- -GCCG----------CGGGCGCCuugCGUGGgCCCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 17814 | 0.66 | 0.534268 |
Target: 5'- uGaGCGCuCCGUGGAuCGCgaaucccaGCCCGGucaccaguuuuGCCa -3' miRNA: 3'- gC-CGCG-GGCGCCUuGCG--------UGGGCC-----------CGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 62284 | 0.66 | 0.534268 |
Target: 5'- gGGCgGCCCgGCgGGAGCGCGCCaacuCGcGCUc -3' miRNA: 3'- gCCG-CGGG-CG-CCUUGCGUGG----GCcCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 72992 | 0.66 | 0.534268 |
Target: 5'- uGGC-CCaCGCGaccgaGGACGCGCCCcccagcccGGCCg -3' miRNA: 3'- gCCGcGG-GCGC-----CUUGCGUGGGc-------CCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 92961 | 0.66 | 0.534268 |
Target: 5'- uGcGUGCCCGgaaCGuGGACGCcgugGCCCGcgcGGCCg -3' miRNA: 3'- gC-CGCGGGC---GC-CUUGCG----UGGGC---CCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 102517 | 0.66 | 0.534268 |
Target: 5'- gGGUGUCCGUaGGccacCGUcCCCGcGGCCg -3' miRNA: 3'- gCCGCGGGCG-CCuu--GCGuGGGC-CCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 110284 | 0.66 | 0.534268 |
Target: 5'- uCGGC-CUCGUGGGggccguguuucuGCGCuacACCCcGGCCg -3' miRNA: 3'- -GCCGcGGGCGCCU------------UGCG---UGGGcCCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 120343 | 0.66 | 0.534268 |
Target: 5'- --aCGCCC-CGGggUgcagcgccaGCACCUGGGCg -3' miRNA: 3'- gccGCGGGcGCCuuG---------CGUGGGCCCGg -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 145428 | 0.66 | 0.534268 |
Target: 5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3' miRNA: 3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5' |
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5506 | 5' | -65.5 | NC_001798.1 | + | 145470 | 0.66 | 0.534268 |
Target: 5'- cCGcGCGCCCccgccCGGccgccGCGCGCCCccgcccGGCCg -3' miRNA: 3'- -GC-CGCGGGc----GCCu----UGCGUGGGc-----CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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