miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5507 3' -55.4 NC_001798.1 + 132143 0.66 0.931305
Target:  5'- cGC-CGCCGggGGCcgGCGGgcggggcgcccCCCCCGg -3'
miRNA:   3'- -CGaGCGGUa-UCGuaUGUCa----------GGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 134493 0.66 0.931305
Target:  5'- gGC-CGCCAUucGCG-ACAG-CCCCCa- -3'
miRNA:   3'- -CGaGCGGUAu-CGUaUGUCaGGGGGca -5'
5507 3' -55.4 NC_001798.1 + 133571 0.66 0.931305
Target:  5'- aGCUgGCCAagAGCAcGCAgacGUUUCCCGg -3'
miRNA:   3'- -CGAgCGGUa-UCGUaUGU---CAGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 3256 0.66 0.931305
Target:  5'- cGCggCGCCGUAGCcgGCGGgcaCCgCGc -3'
miRNA:   3'- -CGa-GCGGUAUCGuaUGUCag-GGgGCa -5'
5507 3' -55.4 NC_001798.1 + 24421 0.66 0.914766
Target:  5'- gGCgUCGCCGgccgacgAGCGcGCGGUgCCCgCCGg -3'
miRNA:   3'- -CG-AGCGGUa------UCGUaUGUCA-GGG-GGCa -5'
5507 3' -55.4 NC_001798.1 + 4436 0.66 0.914766
Target:  5'- gGCUgGCCAUGGgGUcCGGguacgCCCCgCGg -3'
miRNA:   3'- -CGAgCGGUAUCgUAuGUCa----GGGG-GCa -5'
5507 3' -55.4 NC_001798.1 + 18581 0.66 0.908771
Target:  5'- gGCcgUGUgAUAGCAaGCAGccCCCCCGg -3'
miRNA:   3'- -CGa-GCGgUAUCGUaUGUCa-GGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 112220 0.66 0.908158
Target:  5'- aGCUCGCUucguacGUAGUuggcgaccAUGCGgucuuuggggccuGUCCCCCGg -3'
miRNA:   3'- -CGAGCGG------UAUCG--------UAUGU-------------CAGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 114275 0.66 0.902537
Target:  5'- aGCUCGgccuguCCGUGGCGUGCgugugcaccaAGUUCCCgGa -3'
miRNA:   3'- -CGAGC------GGUAUCGUAUG----------UCAGGGGgCa -5'
5507 3' -55.4 NC_001798.1 + 98479 0.67 0.896067
Target:  5'- cCUCGCCcccagacUAGCGggcgGCGGgagcgacgcgCCCCCGUa -3'
miRNA:   3'- cGAGCGGu------AUCGUa---UGUCa---------GGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 71091 0.67 0.896067
Target:  5'- aGCcCGCgGUcGGCGUGCGcgCCCCCGg -3'
miRNA:   3'- -CGaGCGgUA-UCGUAUGUcaGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 129352 0.67 0.889364
Target:  5'- cGCcCGCCG-GGCcugGCGGggCCCCCGg -3'
miRNA:   3'- -CGaGCGGUaUCGua-UGUCa-GGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 45499 0.67 0.882431
Target:  5'- --aCGCC--GGCG-ACAGaUCCCCCGUu -3'
miRNA:   3'- cgaGCGGuaUCGUaUGUC-AGGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 100849 0.67 0.867897
Target:  5'- cGCUUGCCGUGGgGcUGCuGGUCCUggCCGg -3'
miRNA:   3'- -CGAGCGGUAUCgU-AUG-UCAGGG--GGCa -5'
5507 3' -55.4 NC_001798.1 + 72348 0.67 0.867897
Target:  5'- aGCUCGCCG-AGCGcGCcGaCCCCCu- -3'
miRNA:   3'- -CGAGCGGUaUCGUaUGuCaGGGGGca -5'
5507 3' -55.4 NC_001798.1 + 128042 0.67 0.867147
Target:  5'- --aCGCCAUcgacccggacugcAGCcc-CGGUCCCCCGg -3'
miRNA:   3'- cgaGCGGUA-------------UCGuauGUCAGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 124136 0.68 0.860305
Target:  5'- cGCgccccCGCCGUGGCGgaggccugucccUGC-GUCgCCCCGUg -3'
miRNA:   3'- -CGa----GCGGUAUCGU------------AUGuCAG-GGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 79691 0.68 0.860305
Target:  5'- gGCg-GCCu--GCGUGCGG-CCCCCGc -3'
miRNA:   3'- -CGagCGGuauCGUAUGUCaGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 10543 0.68 0.852504
Target:  5'- cGCgaucgCGCCAc-GCcaacuccgaAUACAGUCCCUCGUc -3'
miRNA:   3'- -CGa----GCGGUauCG---------UAUGUCAGGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 363 0.68 0.852504
Target:  5'- cGCcCGCCc--GCAcACGGUUCCCCGc -3'
miRNA:   3'- -CGaGCGGuauCGUaUGUCAGGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.