Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5507 | 3' | -55.4 | NC_001798.1 | + | 96162 | 0.75 | 0.464541 |
Target: 5'- aCUCGCCAUGGCGgccgcgCCCCCGg -3' miRNA: 3'- cGAGCGGUAUCGUaugucaGGGGGCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 98479 | 0.67 | 0.896067 |
Target: 5'- cCUCGCCcccagacUAGCGggcgGCGGgagcgacgcgCCCCCGUa -3' miRNA: 3'- cGAGCGGu------AUCGUa---UGUCa---------GGGGGCA- -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 100849 | 0.67 | 0.867897 |
Target: 5'- cGCUUGCCGUGGgGcUGCuGGUCCUggCCGg -3' miRNA: 3'- -CGAGCGGUAUCgU-AUG-UCAGGG--GGCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 112220 | 0.66 | 0.908158 |
Target: 5'- aGCUCGCUucguacGUAGUuggcgaccAUGCGgucuuuggggccuGUCCCCCGg -3' miRNA: 3'- -CGAGCGG------UAUCG--------UAUGU-------------CAGGGGGCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 114275 | 0.66 | 0.902537 |
Target: 5'- aGCUCGgccuguCCGUGGCGUGCgugugcaccaAGUUCCCgGa -3' miRNA: 3'- -CGAGC------GGUAUCGUAUG----------UCAGGGGgCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 124136 | 0.68 | 0.860305 |
Target: 5'- cGCgccccCGCCGUGGCGgaggccugucccUGC-GUCgCCCCGUg -3' miRNA: 3'- -CGa----GCGGUAUCGU------------AUGuCAG-GGGGCA- -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 128042 | 0.67 | 0.867147 |
Target: 5'- --aCGCCAUcgacccggacugcAGCcc-CGGUCCCCCGg -3' miRNA: 3'- cgaGCGGUA-------------UCGuauGUCAGGGGGCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 129352 | 0.67 | 0.889364 |
Target: 5'- cGCcCGCCG-GGCcugGCGGggCCCCCGg -3' miRNA: 3'- -CGaGCGGUaUCGua-UGUCa-GGGGGCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 132143 | 0.66 | 0.931305 |
Target: 5'- cGC-CGCCGggGGCcgGCGGgcggggcgcccCCCCCGg -3' miRNA: 3'- -CGaGCGGUa-UCGuaUGUCa----------GGGGGCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 133571 | 0.66 | 0.931305 |
Target: 5'- aGCUgGCCAagAGCAcGCAgacGUUUCCCGg -3' miRNA: 3'- -CGAgCGGUa-UCGUaUGU---CAGGGGGCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 133938 | 0.68 | 0.836303 |
Target: 5'- --gCGUCGUGGCAUGgaAG-CCCCCGg -3' miRNA: 3'- cgaGCGGUAUCGUAUg-UCaGGGGGCa -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 134493 | 0.66 | 0.931305 |
Target: 5'- gGC-CGCCAUucGCG-ACAG-CCCCCa- -3' miRNA: 3'- -CGaGCGGUAu-CGUaUGUCaGGGGGca -5' |
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5507 | 3' | -55.4 | NC_001798.1 | + | 149558 | 0.73 | 0.562386 |
Target: 5'- --aUGuCCAggacgGGCAgGCAGUCCCCCGUg -3' miRNA: 3'- cgaGC-GGUa----UCGUaUGUCAGGGGGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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