miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5507 3' -55.4 NC_001798.1 + 51135 0.71 0.705639
Target:  5'- -gUCGCCGggaGGCccGCGGUCaCCCCGg -3'
miRNA:   3'- cgAGCGGUa--UCGuaUGUCAG-GGGGCa -5'
5507 3' -55.4 NC_001798.1 + 46368 0.7 0.735547
Target:  5'- aGCUCGCCc--GCGUAgacCAGcgaUCCCCCGc -3'
miRNA:   3'- -CGAGCGGuauCGUAU---GUC---AGGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 45499 0.67 0.882431
Target:  5'- --aCGCC--GGCG-ACAGaUCCCCCGUu -3'
miRNA:   3'- cgaGCGGuaUCGUaUGUC-AGGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 32049 0.77 0.376317
Target:  5'- cGCUCGCCccGGCGUccGCGGgcgccgcgCCCCCGUc -3'
miRNA:   3'- -CGAGCGGuaUCGUA--UGUCa-------GGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 24421 0.66 0.914766
Target:  5'- gGCgUCGCCGgccgacgAGCGcGCGGUgCCCgCCGg -3'
miRNA:   3'- -CG-AGCGGUa------UCGUaUGUCA-GGG-GGCa -5'
5507 3' -55.4 NC_001798.1 + 19322 0.71 0.68537
Target:  5'- cUUCGCU--GGC-UACGGUCCCUCGUg -3'
miRNA:   3'- cGAGCGGuaUCGuAUGUCAGGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 18581 0.66 0.908771
Target:  5'- gGCcgUGUgAUAGCAaGCAGccCCCCCGg -3'
miRNA:   3'- -CGa-GCGgUAUCGUaUGUCa-GGGGGCa -5'
5507 3' -55.4 NC_001798.1 + 10543 0.68 0.852504
Target:  5'- cGCgaucgCGCCAc-GCcaacuccgaAUACAGUCCCUCGUc -3'
miRNA:   3'- -CGa----GCGGUauCG---------UAUGUCAGGGGGCA- -5'
5507 3' -55.4 NC_001798.1 + 7486 0.7 0.764635
Target:  5'- gGCUUGCC-UAGCc--CGGUCCCCUa- -3'
miRNA:   3'- -CGAGCGGuAUCGuauGUCAGGGGGca -5'
5507 3' -55.4 NC_001798.1 + 4436 0.66 0.914766
Target:  5'- gGCUgGCCAUGGgGUcCGGguacgCCCCgCGg -3'
miRNA:   3'- -CGAgCGGUAUCgUAuGUCa----GGGG-GCa -5'
5507 3' -55.4 NC_001798.1 + 3256 0.66 0.931305
Target:  5'- cGCggCGCCGUAGCcgGCGGgcaCCgCGc -3'
miRNA:   3'- -CGa-GCGGUAUCGuaUGUCag-GGgGCa -5'
5507 3' -55.4 NC_001798.1 + 439 0.71 0.695532
Target:  5'- cGCgCGCCAcggGGC-UGCGGUCCCgCGg -3'
miRNA:   3'- -CGaGCGGUa--UCGuAUGUCAGGGgGCa -5'
5507 3' -55.4 NC_001798.1 + 363 0.68 0.852504
Target:  5'- cGCcCGCCc--GCAcACGGUUCCCCGc -3'
miRNA:   3'- -CGaGCGGuauCGUaUGUCAGGGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.