miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5507 5' -50.8 NC_001798.1 + 150089 0.66 0.997093
Target:  5'- gGGCGAGGGGCgagcg-CGGGGcggcGGa -3'
miRNA:   3'- gCUGCUCCCUGacauaaGCCUCaa--CC- -5'
5507 5' -50.8 NC_001798.1 + 148379 0.66 0.996633
Target:  5'- uGAgGAGGGGCgggcguggcgggcagGUGUgcgggCGGGGU-GGg -3'
miRNA:   3'- gCUgCUCCCUGa--------------CAUAa----GCCUCAaCC- -5'
5507 5' -50.8 NC_001798.1 + 92622 0.66 0.995991
Target:  5'- aCGACGGGGGacgcGCUGUGcgagcggcUCGGAc-UGGa -3'
miRNA:   3'- -GCUGCUCCC----UGACAUa-------AGCCUcaACC- -5'
5507 5' -50.8 NC_001798.1 + 48530 0.66 0.995991
Target:  5'- uGGCGAGGGGCgGga---GGGGcgGGa -3'
miRNA:   3'- gCUGCUCCCUGaCauaagCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 10593 0.66 0.995991
Target:  5'- -aACGGGGGACUGUAUgcuauggcgagCGGuuccgGGg -3'
miRNA:   3'- gcUGCUCCCUGACAUAa----------GCCucaa-CC- -5'
5507 5' -50.8 NC_001798.1 + 101836 0.66 0.995395
Target:  5'- gCGGCGGGGGGaggcGUGggucccggcggcggCGGAGggGGg -3'
miRNA:   3'- -GCUGCUCCCUga--CAUaa------------GCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 149394 0.66 0.995324
Target:  5'- cCGACGcgGGGGGCgucggGUAgUCGGGGg--- -3'
miRNA:   3'- -GCUGC--UCCCUGa----CAUaAGCCUCaacc -5'
5507 5' -50.8 NC_001798.1 + 95922 0.66 0.995324
Target:  5'- uGGCGAguccuggguGGGugUGUGg--GGAGggGGg -3'
miRNA:   3'- gCUGCU---------CCCugACAUaagCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 67198 0.66 0.994324
Target:  5'- gGGCGGGGGGacagccugggguccUUGggGUUCGGGGguccUUGGg -3'
miRNA:   3'- gCUGCUCCCU--------------GACa-UAAGCCUC----AACC- -5'
5507 5' -50.8 NC_001798.1 + 100996 0.67 0.992764
Target:  5'- gCGGgGAGGGGgaGgaaggcgCGGAGggGGg -3'
miRNA:   3'- -GCUgCUCCCUgaCauaa---GCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 15194 0.67 0.992764
Target:  5'- gGugGGGGGGCUGgcgAgcCGGGGg--- -3'
miRNA:   3'- gCugCUCCCUGACa--UaaGCCUCaacc -5'
5507 5' -50.8 NC_001798.1 + 105722 0.67 0.991697
Target:  5'- uCGACacccAGGGGCUGUugUCGGG--UGGg -3'
miRNA:   3'- -GCUGc---UCCCUGACAuaAGCCUcaACC- -5'
5507 5' -50.8 NC_001798.1 + 34159 0.67 0.990509
Target:  5'- aCGACGGGGGGggGggaaaCGGGGgUGGg -3'
miRNA:   3'- -GCUGCUCCCUgaCauaa-GCCUCaACC- -5'
5507 5' -50.8 NC_001798.1 + 112837 0.67 0.989192
Target:  5'- gGGCGuGGGugUGaauUUCGGGGguuccGGg -3'
miRNA:   3'- gCUGCuCCCugACau-AAGCCUCaa---CC- -5'
5507 5' -50.8 NC_001798.1 + 30949 0.68 0.984377
Target:  5'- gGGCGGGGGGCgGg---CGGGGgucGGg -3'
miRNA:   3'- gCUGCUCCCUGaCauaaGCCUCaa-CC- -5'
5507 5' -50.8 NC_001798.1 + 108853 0.69 0.975618
Target:  5'- aCGACGGGcGGGCUGgcGUUCGG-GUg-- -3'
miRNA:   3'- -GCUGCUC-CCUGACa-UAAGCCuCAacc -5'
5507 5' -50.8 NC_001798.1 + 55998 0.69 0.975618
Target:  5'- gGGCGAGGGGCUgGUAggCGGGu---- -3'
miRNA:   3'- gCUGCUCCCUGA-CAUaaGCCUcaacc -5'
5507 5' -50.8 NC_001798.1 + 68489 0.69 0.972956
Target:  5'- aCGGCGAGcGGAaaGUcaacguuucgGUUCGGGGgaGGg -3'
miRNA:   3'- -GCUGCUC-CCUgaCA----------UAAGCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 111822 0.69 0.972956
Target:  5'- gGGCGuccAGGGGCUGgcg-CGGGGcgGGa -3'
miRNA:   3'- gCUGC---UCCCUGACauaaGCCUCaaCC- -5'
5507 5' -50.8 NC_001798.1 + 63245 0.69 0.972956
Target:  5'- aGGCuGAGGGgaaaGCUGgcgUCGGGGgcGGg -3'
miRNA:   3'- gCUG-CUCCC----UGACauaAGCCUCaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.