miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5508 3' -55.1 NC_001798.1 + 79138 0.66 0.920832
Target:  5'- cGGAGGCCgUGGAGGag---CUGg-- -3'
miRNA:   3'- aCCUCUGGgACCUCCgguaaGACaaa -5'
5508 3' -55.1 NC_001798.1 + 5173 0.66 0.920832
Target:  5'- gGGuAGAUCCUGGcGGCCGcgUCgGUa- -3'
miRNA:   3'- aCC-UCUGGGACCuCCGGUa-AGaCAaa -5'
5508 3' -55.1 NC_001798.1 + 111594 0.66 0.920832
Target:  5'- gGGGGGCCCggcgGGGcGGCCuc-CUGg-- -3'
miRNA:   3'- aCCUCUGGGa---CCU-CCGGuaaGACaaa -5'
5508 3' -55.1 NC_001798.1 + 97213 0.66 0.920832
Target:  5'- aGGAGACCgCcgcGGuGGCCGUggagCUGg-- -3'
miRNA:   3'- aCCUCUGG-Ga--CCuCCGGUAa---GACaaa -5'
5508 3' -55.1 NC_001798.1 + 95587 0.66 0.914989
Target:  5'- cGGAGGCCCUGGucaGCCAgcUCg---- -3'
miRNA:   3'- aCCUCUGGGACCuc-CGGUa-AGacaaa -5'
5508 3' -55.1 NC_001798.1 + 57451 0.66 0.914989
Target:  5'- cGGGGGCCCggucuugGGGGGCgGggCcgGUUUg -3'
miRNA:   3'- aCCUCUGGGa------CCUCCGgUaaGa-CAAA- -5'
5508 3' -55.1 NC_001798.1 + 79228 0.66 0.914989
Target:  5'- gGGAGaugaacuuugacGCCCUgGGGGGCCug-CUGg-- -3'
miRNA:   3'- aCCUC------------UGGGA-CCUCCGGuaaGACaaa -5'
5508 3' -55.1 NC_001798.1 + 114494 0.66 0.908896
Target:  5'- gGGAGGCCCUGGAcgggacGGgCAUUagcCUGc-- -3'
miRNA:   3'- aCCUCUGGGACCU------CCgGUAA---GACaaa -5'
5508 3' -55.1 NC_001798.1 + 45004 0.66 0.908896
Target:  5'- aGGAGGCCCUGGcgguGGUCAaugcgcUUUUGc-- -3'
miRNA:   3'- aCCUCUGGGACCu---CCGGU------AAGACaaa -5'
5508 3' -55.1 NC_001798.1 + 90091 0.66 0.902556
Target:  5'- cGGcAGGcCCCUGGAGGCgAgaucgCUGa-- -3'
miRNA:   3'- aCC-UCU-GGGACCUCCGgUaa---GACaaa -5'
5508 3' -55.1 NC_001798.1 + 6219 0.66 0.902556
Target:  5'- cGGuGACCCgGGGGGCCGg------- -3'
miRNA:   3'- aCCuCUGGGaCCUCCGGUaagacaaa -5'
5508 3' -55.1 NC_001798.1 + 78319 0.66 0.902556
Target:  5'- cGGAauGACCC-GGAGGCCAccgcggagCUGg-- -3'
miRNA:   3'- aCCU--CUGGGaCCUCCGGUaa------GACaaa -5'
5508 3' -55.1 NC_001798.1 + 24623 0.66 0.895972
Target:  5'- cGcGGGAUCCUGGAGGCg---CUGg-- -3'
miRNA:   3'- aC-CUCUGGGACCUCCGguaaGACaaa -5'
5508 3' -55.1 NC_001798.1 + 115188 0.66 0.891905
Target:  5'- cUGGAGGCCCUGGAGagacgcaucuacgccGCCAc------- -3'
miRNA:   3'- -ACCUCUGGGACCUC---------------CGGUaagacaaa -5'
5508 3' -55.1 NC_001798.1 + 131378 0.66 0.889146
Target:  5'- gGGGGAucCCCUGGGGGCCcggCg---- -3'
miRNA:   3'- aCCUCU--GGGACCUCCGGuaaGacaaa -5'
5508 3' -55.1 NC_001798.1 + 97042 0.66 0.889146
Target:  5'- aGGAGGCCgacgcccugCUGGAGGCgCAUgacgUGUUUc -3'
miRNA:   3'- aCCUCUGG---------GACCUCCG-GUAag--ACAAA- -5'
5508 3' -55.1 NC_001798.1 + 134263 0.67 0.874788
Target:  5'- cUGGcGGCCCUGGAGcGCCAg------- -3'
miRNA:   3'- -ACCuCUGGGACCUC-CGGUaagacaaa -5'
5508 3' -55.1 NC_001798.1 + 79543 0.67 0.874788
Target:  5'- cGGGGcCCCUGGugcugcgugAGGCCGUcagcgcUCUGg-- -3'
miRNA:   3'- aCCUCuGGGACC---------UCCGGUA------AGACaaa -5'
5508 3' -55.1 NC_001798.1 + 62599 0.67 0.867266
Target:  5'- cGGAGGCCCUGGAcuGGCUg-------- -3'
miRNA:   3'- aCCUCUGGGACCU--CCGGuaagacaaa -5'
5508 3' -55.1 NC_001798.1 + 114706 0.68 0.826462
Target:  5'- cGGGcGACCCUGGucGCCGagCUGa-- -3'
miRNA:   3'- aCCU-CUGGGACCucCGGUaaGACaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.