miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5508 5' -51.5 NC_001798.1 + 136131 0.67 0.985195
Target:  5'- uGGaAGGCGUgUGGGGCGAggGCGggagCUUUg -3'
miRNA:   3'- -CC-UCUGCAaACCCUGCU--UGCa---GAGGu -5'
5508 5' -51.5 NC_001798.1 + 133959 0.67 0.98841
Target:  5'- cGGcauCGUUUGGGugGAggagaGCGUCagcgCCAu -3'
miRNA:   3'- -CCucuGCAAACCCugCU-----UGCAGa---GGU- -5'
5508 5' -51.5 NC_001798.1 + 133723 0.69 0.961896
Target:  5'- cGGGA-GUUUGGGGCGcGCG-CUUCAa -3'
miRNA:   3'- cCUCUgCAAACCCUGCuUGCaGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 125244 0.66 0.993198
Target:  5'- -uAGGCGUugcgUUGGGGCacGGCGUcCUCCGg -3'
miRNA:   3'- ccUCUGCA----AACCCUGc-UUGCA-GAGGU- -5'
5508 5' -51.5 NC_001798.1 + 120070 0.66 0.991054
Target:  5'- cGGAGACGagcuccUGGGACGccauGACGcCcCCGg -3'
miRNA:   3'- -CCUCUGCaa----ACCCUGC----UUGCaGaGGU- -5'
5508 5' -51.5 NC_001798.1 + 102483 0.69 0.9653
Target:  5'- aGGAGGCGgguagugcgGGGACGGGCcggcgccgggGUgUCCGu -3'
miRNA:   3'- -CCUCUGCaaa------CCCUGCUUG----------CAgAGGU- -5'
5508 5' -51.5 NC_001798.1 + 102031 0.76 0.672881
Target:  5'- cGGGGugG-UUGGG-CGGGgGUCUCCGu -3'
miRNA:   3'- -CCUCugCaAACCCuGCUUgCAGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 100782 0.69 0.961896
Target:  5'- gGGAGuaGUggGGGGCGggUGUCggCCGu -3'
miRNA:   3'- -CCUCugCAaaCCCUGCuuGCAGa-GGU- -5'
5508 5' -51.5 NC_001798.1 + 95686 0.66 0.989799
Target:  5'- cGGcGGCGgcgGGGGCGGccgGCGUCgcCCGa -3'
miRNA:   3'- -CCuCUGCaaaCCCUGCU---UGCAGa-GGU- -5'
5508 5' -51.5 NC_001798.1 + 90395 0.66 0.994104
Target:  5'- gGGGGGCGcggUUGGGcCGGcGCGUUcCCGc -3'
miRNA:   3'- -CCUCUGCa--AACCCuGCU-UGCAGaGGU- -5'
5508 5' -51.5 NC_001798.1 + 88058 0.67 0.986554
Target:  5'- gGGGGGCGggcucguccccUGGGGCGGcgGCGUCUa-- -3'
miRNA:   3'- -CCUCUGCaa---------ACCCUGCU--UGCAGAggu -5'
5508 5' -51.5 NC_001798.1 + 85828 0.69 0.958267
Target:  5'- gGGGGGCG---GGGGCGGGCGggggCUCgGg -3'
miRNA:   3'- -CCUCUGCaaaCCCUGCUUGCa---GAGgU- -5'
5508 5' -51.5 NC_001798.1 + 78929 0.7 0.941412
Target:  5'- cGAGGCGgagUGGGACGAG-GUCUg-- -3'
miRNA:   3'- cCUCUGCaa-ACCCUGCUUgCAGAggu -5'
5508 5' -51.5 NC_001798.1 + 64629 0.73 0.843953
Target:  5'- aGAG-CGUgUUGGGGCGcAGCGUCUCg- -3'
miRNA:   3'- cCUCuGCA-AACCCUGC-UUGCAGAGgu -5'
5508 5' -51.5 NC_001798.1 + 59686 0.67 0.981342
Target:  5'- uGGGGGCGgc-GGGcACGccCGUCUUCGg -3'
miRNA:   3'- -CCUCUGCaaaCCC-UGCuuGCAGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 59554 0.69 0.961896
Target:  5'- cGGAGAgGgggcUGGGGCucGCGUCgCCGg -3'
miRNA:   3'- -CCUCUgCaa--ACCCUGcuUGCAGaGGU- -5'
5508 5' -51.5 NC_001798.1 + 58805 0.72 0.859917
Target:  5'- aGGAGGaaaagGGGAUGGACGUCgucggCCAg -3'
miRNA:   3'- -CCUCUgcaaaCCCUGCUUGCAGa----GGU- -5'
5508 5' -51.5 NC_001798.1 + 57523 0.7 0.928381
Target:  5'- gGGGGGCGUgggugugguucggGGGGCGGAUGcgUUCCGc -3'
miRNA:   3'- -CCUCUGCAaa-----------CCCUGCUUGCa-GAGGU- -5'
5508 5' -51.5 NC_001798.1 + 56552 0.66 0.994834
Target:  5'- --cGAUGUcUGGGACGcGACGgccaccuUCUCCGc -3'
miRNA:   3'- ccuCUGCAaACCCUGC-UUGC-------AGAGGU- -5'
5508 5' -51.5 NC_001798.1 + 39905 0.71 0.902547
Target:  5'- gGGGGACcUUUGGGAacgccgcguCGAugGcCUCCGc -3'
miRNA:   3'- -CCUCUGcAAACCCU---------GCUugCaGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.