miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 3' -63 NC_001798.1 + 68779 0.73 0.270691
Target:  5'- gCCCGGGuGgccGGUGUGugUGGCCUCCu -3'
miRNA:   3'- aGGGCCC-Caa-CCGCACcgACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 70325 0.67 0.549324
Target:  5'- gCCCGGcGGaggcgcgGGCGU-GCUGGCacccgCUCCu -3'
miRNA:   3'- aGGGCC-CCaa-----CCGCAcCGACCG-----GAGG- -5'
5509 3' -63 NC_001798.1 + 74394 0.7 0.390421
Target:  5'- gCCCGGGGgccgUGGCGccGGC-GGaCCUgaCCg -3'
miRNA:   3'- aGGGCCCCa---ACCGCa-CCGaCC-GGA--GG- -5'
5509 3' -63 NC_001798.1 + 77330 0.68 0.466395
Target:  5'- gCCgCGGGGUauguaaaGGCGacucGGCUGGCC-CUg -3'
miRNA:   3'- aGG-GCCCCAa------CCGCa---CCGACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 80246 0.68 0.493381
Target:  5'- aCCCGGGGccuccuguucGGCacgcGGCUGGCCgacuggcgCCg -3'
miRNA:   3'- aGGGCCCCaa--------CCGca--CCGACCGGa-------GG- -5'
5509 3' -63 NC_001798.1 + 81792 0.68 0.466395
Target:  5'- cCCCGaGGGgUGGCGUccGCcGGCaCUCCc -3'
miRNA:   3'- aGGGC-CCCaACCGCAc-CGaCCG-GAGG- -5'
5509 3' -63 NC_001798.1 + 86895 0.7 0.406602
Target:  5'- -gCCGGGaaccccGGCGUGGagcgccgGGCCUCCc -3'
miRNA:   3'- agGGCCCcaa---CCGCACCga-----CCGGAGG- -5'
5509 3' -63 NC_001798.1 + 88020 0.68 0.466395
Target:  5'- cUCCCGGGGgcgcUUGGcCGgggagGGCagGGCCgCUg -3'
miRNA:   3'- -AGGGCCCC----AACC-GCa----CCGa-CCGGaGG- -5'
5509 3' -63 NC_001798.1 + 90850 0.66 0.636269
Target:  5'- gUCCCGGcg--GGCGUGa-UGGCgUCCa -3'
miRNA:   3'- -AGGGCCccaaCCGCACcgACCGgAGG- -5'
5509 3' -63 NC_001798.1 + 96694 0.66 0.597378
Target:  5'- gUCCGGGaGUuuauggUGGCGgcgguggGGUcgGGCCUCa -3'
miRNA:   3'- aGGGCCC-CA------ACCGCa------CCGa-CCGGAGg -5'
5509 3' -63 NC_001798.1 + 96981 0.66 0.626534
Target:  5'- aCCgCGGcGGgcGGCGgGGCcagGGCCggcCCg -3'
miRNA:   3'- aGG-GCC-CCaaCCGCaCCGa--CCGGa--GG- -5'
5509 3' -63 NC_001798.1 + 102022 0.68 0.475307
Target:  5'- --gCGGGGUagcggGGUGguugGGCgggGGUCUCCg -3'
miRNA:   3'- aggGCCCCAa----CCGCa---CCGa--CCGGAGG- -5'
5509 3' -63 NC_001798.1 + 108837 0.68 0.478895
Target:  5'- gCCCGuGGGcgucuggacgacgGGCG-GGCUGGCgUUCg -3'
miRNA:   3'- aGGGC-CCCaa-----------CCGCaCCGACCGgAGG- -5'
5509 3' -63 NC_001798.1 + 109372 0.66 0.616803
Target:  5'- gCCCGGGGagcaGCG-GGCUGcGCggCCg -3'
miRNA:   3'- aGGGCCCCaac-CGCaCCGAC-CGgaGG- -5'
5509 3' -63 NC_001798.1 + 109947 0.68 0.466395
Target:  5'- aUCCCGGcGGacgucaUGGCacaacagacccGcGGCgUGGCCUCCg -3'
miRNA:   3'- -AGGGCC-CCa-----ACCG-----------CaCCG-ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 111584 0.73 0.264654
Target:  5'- cUCCCugagcgGGGGgcccGGCGgGGC-GGCCUCCu -3'
miRNA:   3'- -AGGG------CCCCaa--CCGCaCCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 112396 0.68 0.463738
Target:  5'- gUCCCGGuGGUgcagGGUgGUGGCauagcugagcuccaUGGCCggcgagCCa -3'
miRNA:   3'- -AGGGCC-CCAa---CCG-CACCG--------------ACCGGa-----GG- -5'
5509 3' -63 NC_001798.1 + 112934 0.66 0.586731
Target:  5'- aCCCgggugGGGGUUGuGUGUagaacccgcgcGGUgcuuguuugauuuUGGCCUCCg -3'
miRNA:   3'- aGGG-----CCCCAAC-CGCA-----------CCG-------------ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 113978 0.66 0.578047
Target:  5'- -gCCGGcGGUgaGGCGUugugcgggaggGGCuUGGCCUUCc -3'
miRNA:   3'- agGGCC-CCAa-CCGCA-----------CCG-ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 114574 0.66 0.636269
Target:  5'- gUCCUGGGGgcguUUGaGCGcGGCacGGCCgaCCa -3'
miRNA:   3'- -AGGGCCCC----AAC-CGCaCCGa-CCGGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.