miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 3' -63 NC_001798.1 + 24153 0.67 0.556945
Target:  5'- aCCUGGGGUacgccaUGGCGgcgGGCcgcuucggcuggGGCCUg- -3'
miRNA:   3'- aGGGCCCCA------ACCGCa--CCGa-----------CCGGAgg -5'
5509 3' -63 NC_001798.1 + 24714 0.67 0.558854
Target:  5'- gCCCGGGGcccGCG-GGCgcGGCCgccCCg -3'
miRNA:   3'- aGGGCCCCaacCGCaCCGa-CCGGa--GG- -5'
5509 3' -63 NC_001798.1 + 27217 0.71 0.351855
Target:  5'- cCCCGGGGcggGGCGcggGGgaGGCggCCg -3'
miRNA:   3'- aGGGCCCCaa-CCGCa--CCgaCCGgaGG- -5'
5509 3' -63 NC_001798.1 + 27699 0.67 0.530422
Target:  5'- cCCCGGGGgaaaagaGGCGgGGCgGGagUCCc -3'
miRNA:   3'- aGGGCCCCaa-----CCGCaCCGaCCggAGG- -5'
5509 3' -63 NC_001798.1 + 27935 0.66 0.636269
Target:  5'- -gCCGGGGUcccGGCGccGGCcgcgccccGGCgCUCCa -3'
miRNA:   3'- agGGCCCCAa--CCGCa-CCGa-------CCG-GAGG- -5'
5509 3' -63 NC_001798.1 + 32377 0.67 0.539845
Target:  5'- gCCCGGGGcccGCGacccGGCgcccGGCCUCa -3'
miRNA:   3'- aGGGCCCCaacCGCa---CCGa---CCGGAGg -5'
5509 3' -63 NC_001798.1 + 33275 0.67 0.549324
Target:  5'- gUCuuGGuGGgugGGCG-GGCUGGCUggCg -3'
miRNA:   3'- -AGggCC-CCaa-CCGCaCCGACCGGagG- -5'
5509 3' -63 NC_001798.1 + 36299 0.7 0.382489
Target:  5'- -gCCGuGGGUgUGGCGgcggGGCgcgGGCCggggCCg -3'
miRNA:   3'- agGGC-CCCA-ACCGCa---CCGa--CCGGa---GG- -5'
5509 3' -63 NC_001798.1 + 37285 0.66 0.636269
Target:  5'- -aUUGGGGcccacccUGGCGUGGgaGGCgacCUCCc -3'
miRNA:   3'- agGGCCCCa------ACCGCACCgaCCG---GAGG- -5'
5509 3' -63 NC_001798.1 + 40126 0.66 0.597378
Target:  5'- gUCgCCGGGGcUGGgaUGGCgGGUgUCCu -3'
miRNA:   3'- -AG-GGCCCCaACCgcACCGaCCGgAGG- -5'
5509 3' -63 NC_001798.1 + 41464 0.71 0.344473
Target:  5'- -gCCGGGGggGGCGgucGGCgGGCC-Ca -3'
miRNA:   3'- agGGCCCCaaCCGCa--CCGaCCGGaGg -5'
5509 3' -63 NC_001798.1 + 43473 0.67 0.558854
Target:  5'- aCgCGGGGgcgGGCGUGag-GGCCgCCg -3'
miRNA:   3'- aGgGCCCCaa-CCGCACcgaCCGGaGG- -5'
5509 3' -63 NC_001798.1 + 47859 0.71 0.351855
Target:  5'- cCCCGGGGgccccgugGGCGccGGCgGGCgCUCg -3'
miRNA:   3'- aGGGCCCCaa------CCGCa-CCGaCCG-GAGg -5'
5509 3' -63 NC_001798.1 + 50881 0.77 0.139688
Target:  5'- gUCUgCGGGGagGGCGUGGUaaaaaaucgGGCCUCCg -3'
miRNA:   3'- -AGG-GCCCCaaCCGCACCGa--------CCGGAGG- -5'
5509 3' -63 NC_001798.1 + 52338 0.68 0.484303
Target:  5'- cCCCGGGGU---CGUGGC-GGCCg-- -3'
miRNA:   3'- aGGGCCCCAaccGCACCGaCCGGagg -5'
5509 3' -63 NC_001798.1 + 56923 0.66 0.610969
Target:  5'- gCCCGGGuaguaggUGGCGgccgugcacgucgccUuaaacGGCUGGCcCUCCa -3'
miRNA:   3'- aGGGCCCca-----ACCGC---------------A-----CCGACCG-GAGG- -5'
5509 3' -63 NC_001798.1 + 58880 0.66 0.578047
Target:  5'- gUCCCGGGcccggaacccccGgaGGCGc-GCcGGCCUCCc -3'
miRNA:   3'- -AGGGCCC------------CaaCCGCacCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 59770 0.67 0.549324
Target:  5'- uUCCCGGcGGUUccgggaacgcgGGCGguacccgGGcCUGGcCCUCg -3'
miRNA:   3'- -AGGGCC-CCAA-----------CCGCa------CC-GACC-GGAGg -5'
5509 3' -63 NC_001798.1 + 65766 0.66 0.616803
Target:  5'- -gCCGGGGcUGGCGUcGUUGaacGCCUgCa -3'
miRNA:   3'- agGGCCCCaACCGCAcCGAC---CGGAgG- -5'
5509 3' -63 NC_001798.1 + 65851 0.66 0.578047
Target:  5'- gCCCGGaGGgUGGCcUGGUaguggUGGCCUg- -3'
miRNA:   3'- aGGGCC-CCaACCGcACCG-----ACCGGAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.