miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 3' -63 NC_001798.1 + 15278 0.69 0.423197
Target:  5'- cCCCGGGuuccgGGCGUGGCggUGGUCgcggcgaCCg -3'
miRNA:   3'- aGGGCCCcaa--CCGCACCG--ACCGGa------GG- -5'
5509 3' -63 NC_001798.1 + 147906 0.69 0.423197
Target:  5'- uUCCCGGGGgggcaGGCGcgGGUcgGGCCcguacgCCc -3'
miRNA:   3'- -AGGGCCCCaa---CCGCa-CCGa-CCGGa-----GG- -5'
5509 3' -63 NC_001798.1 + 147008 0.69 0.431646
Target:  5'- cCUCGGGGacccccgGGCGggccggGGCuUGGCCgCCg -3'
miRNA:   3'- aGGGCCCCaa-----CCGCa-----CCG-ACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 154137 0.69 0.431646
Target:  5'- cCCCGGcGGcgggacaUGGCGggcGGCUGGgCUCg -3'
miRNA:   3'- aGGGCC-CCa------ACCGCa--CCGACCgGAGg -5'
5509 3' -63 NC_001798.1 + 23575 0.69 0.448834
Target:  5'- cCCCGGGGgcGGCGccccGGCcGaGCCcgCCc -3'
miRNA:   3'- aGGGCCCCaaCCGCa---CCGaC-CGGa-GG- -5'
5509 3' -63 NC_001798.1 + 151612 0.69 0.455815
Target:  5'- -gCCGGGGgccgggccgggGGCGUGGCc-GCgUCCa -3'
miRNA:   3'- agGGCCCCaa---------CCGCACCGacCGgAGG- -5'
5509 3' -63 NC_001798.1 + 112396 0.68 0.463738
Target:  5'- gUCCCGGuGGUgcagGGUgGUGGCauagcugagcuccaUGGCCggcgagCCa -3'
miRNA:   3'- -AGGGCC-CCAa---CCG-CACCG--------------ACCGGa-----GG- -5'
5509 3' -63 NC_001798.1 + 109947 0.68 0.466395
Target:  5'- aUCCCGGcGGacgucaUGGCacaacagacccGcGGCgUGGCCUCCg -3'
miRNA:   3'- -AGGGCC-CCa-----ACCG-----------CaCCG-ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 81792 0.68 0.466395
Target:  5'- cCCCGaGGGgUGGCGUccGCcGGCaCUCCc -3'
miRNA:   3'- aGGGC-CCCaACCGCAc-CGaCCG-GAGG- -5'
5509 3' -63 NC_001798.1 + 88020 0.68 0.466395
Target:  5'- cUCCCGGGGgcgcUUGGcCGgggagGGCagGGCCgCUg -3'
miRNA:   3'- -AGGGCCCC----AACC-GCa----CCGa-CCGGaGG- -5'
5509 3' -63 NC_001798.1 + 77330 0.68 0.466395
Target:  5'- gCCgCGGGGUauguaaaGGCGacucGGCUGGCC-CUg -3'
miRNA:   3'- aGG-GCCCCAa------CCGCa---CCGACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 102022 0.68 0.475307
Target:  5'- --gCGGGGUagcggGGUGguugGGCgggGGUCUCCg -3'
miRNA:   3'- aggGCCCCAa----CCGCa---CCGa--CCGGAGG- -5'
5509 3' -63 NC_001798.1 + 18829 0.68 0.475307
Target:  5'- cCCCGGuGGUgguucgcccGGCGaaccuucgcaGGCUGGCCgagCCu -3'
miRNA:   3'- aGGGCC-CCAa--------CCGCa---------CCGACCGGa--GG- -5'
5509 3' -63 NC_001798.1 + 108837 0.68 0.478895
Target:  5'- gCCCGuGGGcgucuggacgacgGGCG-GGCUGGCgUUCg -3'
miRNA:   3'- aGGGC-CCCaa-----------CCGCaCCGACCGgAGG- -5'
5509 3' -63 NC_001798.1 + 150042 0.68 0.484303
Target:  5'- gUCCGGGGcccGGCGcGGCgccgcccucuUGGCCcCCa -3'
miRNA:   3'- aGGGCCCCaa-CCGCaCCG----------ACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 1653 0.68 0.484303
Target:  5'- -gUCGGGGUacaggcGcGCGUGcGC-GGCCUCCa -3'
miRNA:   3'- agGGCCCCAa-----C-CGCAC-CGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 52338 0.68 0.484303
Target:  5'- cCCCGGGGU---CGUGGC-GGCCg-- -3'
miRNA:   3'- aGGGCCCCAaccGCACCGaCCGGagg -5'
5509 3' -63 NC_001798.1 + 80246 0.68 0.493381
Target:  5'- aCCCGGGGccuccuguucGGCacgcGGCUGGCCgacuggcgCCg -3'
miRNA:   3'- aGGGCCCCaa--------CCGca--CCGACCGGa-------GG- -5'
5509 3' -63 NC_001798.1 + 18216 0.68 0.502535
Target:  5'- cUCgCCGGGGgacggugGGCGggaagGGUggaUGGUUUCCg -3'
miRNA:   3'- -AG-GGCCCCaa-----CCGCa----CCG---ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 23830 0.68 0.508063
Target:  5'- cCCCGGGGcgcgugcuguacGGCG-GGCUGGgCgacagCCg -3'
miRNA:   3'- aGGGCCCCaa----------CCGCaCCGACCgGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.