miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 3' -63 NC_001798.1 + 134463 0.78 0.123494
Target:  5'- cCCCGGcgcgcGGUUGGCGUGGgcgcgcCUGGCCgCCa -3'
miRNA:   3'- aGGGCC-----CCAACCGCACC------GACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 50881 0.77 0.139688
Target:  5'- gUCUgCGGGGagGGCGUGGUaaaaaaucgGGCCUCCg -3'
miRNA:   3'- -AGG-GCCCCaaCCGCACCGa--------CCGGAGG- -5'
5509 3' -63 NC_001798.1 + 3889 0.74 0.220234
Target:  5'- cCCCGGGGgcGGgG-GGCcGGCC-CCg -3'
miRNA:   3'- aGGGCCCCaaCCgCaCCGaCCGGaGG- -5'
5509 3' -63 NC_001798.1 + 4417 0.73 0.264654
Target:  5'- gCCgGGGGUcgcGGCGacaGGCUGGCCauggggUCCg -3'
miRNA:   3'- aGGgCCCCAa--CCGCa--CCGACCGG------AGG- -5'
5509 3' -63 NC_001798.1 + 24052 0.73 0.264654
Target:  5'- gCCCGGGGacgUGGCGcUGGaccaGGCCUgCu -3'
miRNA:   3'- aGGGCCCCa--ACCGC-ACCga--CCGGAgG- -5'
5509 3' -63 NC_001798.1 + 111584 0.73 0.264654
Target:  5'- cUCCCugagcgGGGGgcccGGCGgGGC-GGCCUCCu -3'
miRNA:   3'- -AGGG------CCCCaa--CCGCaCCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 68779 0.73 0.270691
Target:  5'- gCCCGGGuGgccGGUGUGugUGGCCUCCu -3'
miRNA:   3'- aGGGCCC-Caa-CCGCACcgACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 19489 0.71 0.316068
Target:  5'- cCCCGGGcccccgcuggccGUUGGCGacGagUGGCCUCCg -3'
miRNA:   3'- aGGGCCC------------CAACCGCacCg-ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 3004 0.71 0.337203
Target:  5'- cCCCGGGcgcGggGGCGcGGCgGGCCgggcUCCg -3'
miRNA:   3'- aGGGCCC---CaaCCGCaCCGaCCGG----AGG- -5'
5509 3' -63 NC_001798.1 + 16225 0.71 0.337203
Target:  5'- gCCUGuGGGggGGCGguggGGCcggGGcCCUCCc -3'
miRNA:   3'- aGGGC-CCCaaCCGCa---CCGa--CC-GGAGG- -5'
5509 3' -63 NC_001798.1 + 130100 0.71 0.343009
Target:  5'- gCCCGGGGcguugcacucgGGCGUaGaGCUcGGCCUCg -3'
miRNA:   3'- aGGGCCCCaa---------CCGCA-C-CGA-CCGGAGg -5'
5509 3' -63 NC_001798.1 + 41464 0.71 0.344473
Target:  5'- -gCCGGGGggGGCGgucGGCgGGCC-Ca -3'
miRNA:   3'- agGGCCCCaaCCGCa--CCGaCCGGaGg -5'
5509 3' -63 NC_001798.1 + 47859 0.71 0.351855
Target:  5'- cCCCGGGGgccccgugGGCGccGGCgGGCgCUCg -3'
miRNA:   3'- aGGGCCCCaa------CCGCa-CCGaCCG-GAGg -5'
5509 3' -63 NC_001798.1 + 27217 0.71 0.351855
Target:  5'- cCCCGGGGcggGGCGcggGGgaGGCggCCg -3'
miRNA:   3'- aGGGCCCCaa-CCGCa--CCgaCCGgaGG- -5'
5509 3' -63 NC_001798.1 + 36299 0.7 0.382489
Target:  5'- -gCCGuGGGUgUGGCGgcggGGCgcgGGCCggggCCg -3'
miRNA:   3'- agGGC-CCCA-ACCGCa---CCGa--CCGGa---GG- -5'
5509 3' -63 NC_001798.1 + 74394 0.7 0.390421
Target:  5'- gCCCGGGGgccgUGGCGccGGC-GGaCCUgaCCg -3'
miRNA:   3'- aGGGCCCCa---ACCGCa-CCGaCC-GGA--GG- -5'
5509 3' -63 NC_001798.1 + 150415 0.7 0.398458
Target:  5'- aCCaCGGGGgcGGCGgcGGCgcggGGCggaCUCCg -3'
miRNA:   3'- aGG-GCCCCaaCCGCa-CCGa---CCG---GAGG- -5'
5509 3' -63 NC_001798.1 + 86895 0.7 0.406602
Target:  5'- -gCCGGGaaccccGGCGUGGagcgccgGGCCUCCc -3'
miRNA:   3'- agGGCCCcaa---CCGCACCga-----CCGGAGG- -5'
5509 3' -63 NC_001798.1 + 2555 0.69 0.414848
Target:  5'- cCCCGcGGGaggGGCGgccgcggGGCggggGGCgUCCg -3'
miRNA:   3'- aGGGC-CCCaa-CCGCa------CCGa---CCGgAGG- -5'
5509 3' -63 NC_001798.1 + 147906 0.69 0.423197
Target:  5'- uUCCCGGGGgggcaGGCGcgGGUcgGGCCcguacgCCc -3'
miRNA:   3'- -AGGGCCCCaa---CCGCa-CCGa-CCGGa-----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.