miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 3' -63 NC_001798.1 + 131344 0.66 0.616803
Target:  5'- cCCCGGGcgcgacGUcGGCGcccGGCgcGGCCUCg -3'
miRNA:   3'- aGGGCCC------CAaCCGCa--CCGa-CCGGAGg -5'
5509 3' -63 NC_001798.1 + 134463 0.78 0.123494
Target:  5'- cCCCGGcgcgcGGUUGGCGUGGgcgcgcCUGGCCgCCa -3'
miRNA:   3'- aGGGCC-----CCAACCGCACC------GACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 58880 0.66 0.578047
Target:  5'- gUCCCGGGcccggaacccccGgaGGCGc-GCcGGCCUCCc -3'
miRNA:   3'- -AGGGCCC------------CaaCCGCacCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 113978 0.66 0.578047
Target:  5'- -gCCGGcGGUgaGGCGUugugcgggaggGGCuUGGCCUUCc -3'
miRNA:   3'- agGGCC-CCAa-CCGCA-----------CCG-ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 112934 0.66 0.586731
Target:  5'- aCCCgggugGGGGUUGuGUGUagaacccgcgcGGUgcuuguuugauuuUGGCCUCCg -3'
miRNA:   3'- aGGG-----CCCCAAC-CGCA-----------CCG-------------ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 40126 0.66 0.597378
Target:  5'- gUCgCCGGGGcUGGgaUGGCgGGUgUCCu -3'
miRNA:   3'- -AG-GGCCCCaACCgcACCGaCCGgAGG- -5'
5509 3' -63 NC_001798.1 + 96694 0.66 0.597378
Target:  5'- gUCCGGGaGUuuauggUGGCGgcgguggGGUcgGGCCUCa -3'
miRNA:   3'- aGGGCCC-CA------ACCGCa------CCGa-CCGGAGg -5'
5509 3' -63 NC_001798.1 + 115838 0.66 0.607082
Target:  5'- gCCCGGGGccUGGagcucGGCguUGGCCgCCa -3'
miRNA:   3'- aGGGCCCCa-ACCgca--CCG--ACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 56923 0.66 0.610969
Target:  5'- gCCCGGGuaguaggUGGCGgccgugcacgucgccUuaaacGGCUGGCcCUCCa -3'
miRNA:   3'- aGGGCCCca-----ACCGC---------------A-----CCGACCG-GAGG- -5'
5509 3' -63 NC_001798.1 + 65766 0.66 0.616803
Target:  5'- -gCCGGGGcUGGCGUcGUUGaacGCCUgCa -3'
miRNA:   3'- agGGCCCCaACCGCAcCGAC---CGGAgG- -5'
5509 3' -63 NC_001798.1 + 109372 0.66 0.616803
Target:  5'- gCCCGGGGagcaGCG-GGCUGcGCggCCg -3'
miRNA:   3'- aGGGCCCCaac-CGCaCCGAC-CGgaGG- -5'
5509 3' -63 NC_001798.1 + 37285 0.66 0.636269
Target:  5'- -aUUGGGGcccacccUGGCGUGGgaGGCgacCUCCc -3'
miRNA:   3'- agGGCCCCa------ACCGCACCgaCCG---GAGG- -5'
5509 3' -63 NC_001798.1 + 96981 0.66 0.626534
Target:  5'- aCCgCGGcGGgcGGCGgGGCcagGGCCggcCCg -3'
miRNA:   3'- aGG-GCC-CCaaCCGCaCCGa--CCGGa--GG- -5'
5509 3' -63 NC_001798.1 + 140516 0.66 0.626534
Target:  5'- cUUCCGGGG-UGGaCGcGGCUGuuCUCg -3'
miRNA:   3'- -AGGGCCCCaACC-GCaCCGACcgGAGg -5'
5509 3' -63 NC_001798.1 + 3318 0.66 0.626534
Target:  5'- --aCGGGGcggcGGCGgcGGCgGGCUUCCc -3'
miRNA:   3'- aggGCCCCaa--CCGCa-CCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 4866 0.66 0.626534
Target:  5'- gUUCGGGGUgggcGGCGguccgucGGCUGGa-UCCg -3'
miRNA:   3'- aGGGCCCCAa---CCGCa------CCGACCggAGG- -5'
5509 3' -63 NC_001798.1 + 149172 0.66 0.626534
Target:  5'- -gCCGGuGGUccGGUGgggGGC-GGCUUCCu -3'
miRNA:   3'- agGGCC-CCAa-CCGCa--CCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 4143 0.66 0.636269
Target:  5'- cCCCGGGGcccucGCG-GGCacccccGCCUCCu -3'
miRNA:   3'- aGGGCCCCaac--CGCaCCGac----CGGAGG- -5'
5509 3' -63 NC_001798.1 + 27935 0.66 0.636269
Target:  5'- -gCCGGGGUcccGGCGccGGCcgcgccccGGCgCUCCa -3'
miRNA:   3'- agGGCCCCAa--CCGCa-CCGa-------CCG-GAGG- -5'
5509 3' -63 NC_001798.1 + 90850 0.66 0.636269
Target:  5'- gUCCCGGcg--GGCGUGa-UGGCgUCCa -3'
miRNA:   3'- -AGGGCCccaaCCGCACcgACCGgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.