miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 3' -63 NC_001798.1 + 1653 0.68 0.484303
Target:  5'- -gUCGGGGUacaggcGcGCGUGcGC-GGCCUCCa -3'
miRNA:   3'- agGGCCCCAa-----C-CGCAC-CGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 2555 0.69 0.414848
Target:  5'- cCCCGcGGGaggGGCGgccgcggGGCggggGGCgUCCg -3'
miRNA:   3'- aGGGC-CCCaa-CCGCa------CCGa---CCGgAGG- -5'
5509 3' -63 NC_001798.1 + 3004 0.71 0.337203
Target:  5'- cCCCGGGcgcGggGGCGcGGCgGGCCgggcUCCg -3'
miRNA:   3'- aGGGCCC---CaaCCGCaCCGaCCGG----AGG- -5'
5509 3' -63 NC_001798.1 + 3318 0.66 0.626534
Target:  5'- --aCGGGGcggcGGCGgcGGCgGGCUUCCc -3'
miRNA:   3'- aggGCCCCaa--CCGCa-CCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 3889 0.74 0.220234
Target:  5'- cCCCGGGGgcGGgG-GGCcGGCC-CCg -3'
miRNA:   3'- aGGGCCCCaaCCgCaCCGaCCGGaGG- -5'
5509 3' -63 NC_001798.1 + 4143 0.66 0.636269
Target:  5'- cCCCGGGGcccucGCG-GGCacccccGCCUCCu -3'
miRNA:   3'- aGGGCCCCaac--CGCaCCGac----CGGAGG- -5'
5509 3' -63 NC_001798.1 + 4417 0.73 0.264654
Target:  5'- gCCgGGGGUcgcGGCGacaGGCUGGCCauggggUCCg -3'
miRNA:   3'- aGGgCCCCAa--CCGCa--CCGACCGG------AGG- -5'
5509 3' -63 NC_001798.1 + 4632 0.68 0.509911
Target:  5'- cUCCGGGGggGGCGacgGGaucgugcgaacGGCCUCg -3'
miRNA:   3'- aGGGCCCCaaCCGCa--CCga---------CCGGAGg -5'
5509 3' -63 NC_001798.1 + 4866 0.66 0.626534
Target:  5'- gUUCGGGGUgggcGGCGguccgucGGCUGGa-UCCg -3'
miRNA:   3'- aGGGCCCCAa---CCGCa------CCGACCggAGG- -5'
5509 3' -63 NC_001798.1 + 8084 0.67 0.56843
Target:  5'- gUCCCGGGGacaGG-GUGGUUGGUgUa- -3'
miRNA:   3'- -AGGGCCCCaa-CCgCACCGACCGgAgg -5'
5509 3' -63 NC_001798.1 + 11171 0.67 0.52106
Target:  5'- aCCacgauGGGGgcGGUGgGGCgGGCCUgCCg -3'
miRNA:   3'- aGGg----CCCCaaCCGCaCCGaCCGGA-GG- -5'
5509 3' -63 NC_001798.1 + 15186 0.67 0.52106
Target:  5'- gUUCGGGGggUGGgGgGGCUGGCgagCCg -3'
miRNA:   3'- aGGGCCCCa-ACCgCaCCGACCGga-GG- -5'
5509 3' -63 NC_001798.1 + 15278 0.69 0.423197
Target:  5'- cCCCGGGuuccgGGCGUGGCggUGGUCgcggcgaCCg -3'
miRNA:   3'- aGGGCCCcaa--CCGCACCG--ACCGGa------GG- -5'
5509 3' -63 NC_001798.1 + 16225 0.71 0.337203
Target:  5'- gCCUGuGGGggGGCGguggGGCcggGGcCCUCCc -3'
miRNA:   3'- aGGGC-CCCaaCCGCa---CCGa--CC-GGAGG- -5'
5509 3' -63 NC_001798.1 + 18216 0.68 0.502535
Target:  5'- cUCgCCGGGGgacggugGGCGggaagGGUggaUGGUUUCCg -3'
miRNA:   3'- -AG-GGCCCCaa-----CCGCa----CCG---ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 18829 0.68 0.475307
Target:  5'- cCCCGGuGGUgguucgcccGGCGaaccuucgcaGGCUGGCCgagCCu -3'
miRNA:   3'- aGGGCC-CCAa--------CCGCa---------CCGACCGGa--GG- -5'
5509 3' -63 NC_001798.1 + 19489 0.71 0.316068
Target:  5'- cCCCGGGcccccgcuggccGUUGGCGacGagUGGCCUCCg -3'
miRNA:   3'- aGGGCCC------------CAACCGCacCg-ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 23575 0.69 0.448834
Target:  5'- cCCCGGGGgcGGCGccccGGCcGaGCCcgCCc -3'
miRNA:   3'- aGGGCCCCaaCCGCa---CCGaC-CGGa-GG- -5'
5509 3' -63 NC_001798.1 + 23830 0.68 0.508063
Target:  5'- cCCCGGGGcgcgugcuguacGGCG-GGCUGGgCgacagCCg -3'
miRNA:   3'- aGGGCCCCaa----------CCGCaCCGACCgGa----GG- -5'
5509 3' -63 NC_001798.1 + 24052 0.73 0.264654
Target:  5'- gCCCGGGGacgUGGCGcUGGaccaGGCCUgCu -3'
miRNA:   3'- aGGGCCCCa--ACCGC-ACCga--CCGGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.