miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 3' -63 NC_001798.1 + 154137 0.69 0.431646
Target:  5'- cCCCGGcGGcgggacaUGGCGggcGGCUGGgCUCg -3'
miRNA:   3'- aGGGCC-CCa------ACCGCa--CCGACCgGAGg -5'
5509 3' -63 NC_001798.1 + 153808 0.67 0.56939
Target:  5'- --gCGGGGggcaggcggcggcaGGCGcGGCgugcggGGCCUCCg -3'
miRNA:   3'- aggGCCCCaa------------CCGCaCCGa-----CCGGAGG- -5'
5509 3' -63 NC_001798.1 + 153069 0.66 0.578047
Target:  5'- cCCUGGGGcgGGCGgagcGGCggGGCggcgCCg -3'
miRNA:   3'- aGGGCCCCaaCCGCa---CCGa-CCGga--GG- -5'
5509 3' -63 NC_001798.1 + 151612 0.69 0.455815
Target:  5'- -gCCGGGGgccgggccgggGGCGUGGCc-GCgUCCa -3'
miRNA:   3'- agGGCCCCaa---------CCGCACCGacCGgAGG- -5'
5509 3' -63 NC_001798.1 + 150415 0.7 0.398458
Target:  5'- aCCaCGGGGgcGGCGgcGGCgcggGGCggaCUCCg -3'
miRNA:   3'- aGG-GCCCCaaCCGCa-CCGa---CCG---GAGG- -5'
5509 3' -63 NC_001798.1 + 150042 0.68 0.484303
Target:  5'- gUCCGGGGcccGGCGcGGCgccgcccucuUGGCCcCCa -3'
miRNA:   3'- aGGGCCCCaa-CCGCaCCG----------ACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 149172 0.66 0.626534
Target:  5'- -gCCGGuGGUccGGUGgggGGC-GGCUUCCu -3'
miRNA:   3'- agGGCC-CCAa-CCGCa--CCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 148366 0.67 0.55599
Target:  5'- cUCCCagccagggugaggaGGGGcgGGCGUGGCgGGCa--- -3'
miRNA:   3'- -AGGG--------------CCCCaaCCGCACCGaCCGgagg -5'
5509 3' -63 NC_001798.1 + 147906 0.69 0.423197
Target:  5'- uUCCCGGGGgggcaGGCGcgGGUcgGGCCcguacgCCc -3'
miRNA:   3'- -AGGGCCCCaa---CCGCa-CCGa-CCGGa-----GG- -5'
5509 3' -63 NC_001798.1 + 147008 0.69 0.431646
Target:  5'- cCUCGGGGacccccgGGCGggccggGGCuUGGCCgCCg -3'
miRNA:   3'- aGGGCCCCaa-----CCGCa-----CCG-ACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 140516 0.66 0.626534
Target:  5'- cUUCCGGGG-UGGaCGcGGCUGuuCUCg -3'
miRNA:   3'- -AGGGCCCCaACC-GCaCCGACcgGAGg -5'
5509 3' -63 NC_001798.1 + 135999 0.69 0.423197
Target:  5'- gUCCCGGGGgcGGgGagucGGUcGGCgUCCc -3'
miRNA:   3'- -AGGGCCCCaaCCgCa---CCGaCCGgAGG- -5'
5509 3' -63 NC_001798.1 + 135246 0.67 0.562679
Target:  5'- gCCCGGGGgcgGGCGggccuggaaaGGCUggacgcgcugguggcGGCCgCCc -3'
miRNA:   3'- aGGGCCCCaa-CCGCa---------CCGA---------------CCGGaGG- -5'
5509 3' -63 NC_001798.1 + 135025 0.67 0.56843
Target:  5'- cCCCGcGGGcaUGGCc-GGCcgUGGCCUCg -3'
miRNA:   3'- aGGGC-CCCa-ACCGcaCCG--ACCGGAGg -5'
5509 3' -63 NC_001798.1 + 134463 0.78 0.123494
Target:  5'- cCCCGGcgcgcGGUUGGCGUGGgcgcgcCUGGCCgCCa -3'
miRNA:   3'- aGGGCC-----CCAACCGCACC------GACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 131344 0.66 0.616803
Target:  5'- cCCCGGGcgcgacGUcGGCGcccGGCgcGGCCUCg -3'
miRNA:   3'- aGGGCCC------CAaCCGCa--CCGa-CCGGAGg -5'
5509 3' -63 NC_001798.1 + 130100 0.71 0.343009
Target:  5'- gCCCGGGGcguugcacucgGGCGUaGaGCUcGGCCUCg -3'
miRNA:   3'- aGGGCCCCaa---------CCGCA-C-CGA-CCGGAGg -5'
5509 3' -63 NC_001798.1 + 115838 0.66 0.607082
Target:  5'- gCCCGGGGccUGGagcucGGCguUGGCCgCCa -3'
miRNA:   3'- aGGGCCCCa-ACCgca--CCG--ACCGGaGG- -5'
5509 3' -63 NC_001798.1 + 114574 0.66 0.636269
Target:  5'- gUCCUGGGGgcguUUGaGCGcGGCacGGCCgaCCa -3'
miRNA:   3'- -AGGGCCCC----AAC-CGCaCCGa-CCGGa-GG- -5'
5509 3' -63 NC_001798.1 + 113978 0.66 0.578047
Target:  5'- -gCCGGcGGUgaGGCGUugugcgggaggGGCuUGGCCUUCc -3'
miRNA:   3'- agGGCC-CCAa-CCGCA-----------CCG-ACCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.