Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5509 | 3' | -63 | NC_001798.1 | + | 112934 | 0.66 | 0.586731 |
Target: 5'- aCCCgggugGGGGUUGuGUGUagaacccgcgcGGUgcuuguuugauuuUGGCCUCCg -3' miRNA: 3'- aGGG-----CCCCAAC-CGCA-----------CCG-------------ACCGGAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 112396 | 0.68 | 0.463738 |
Target: 5'- gUCCCGGuGGUgcagGGUgGUGGCauagcugagcuccaUGGCCggcgagCCa -3' miRNA: 3'- -AGGGCC-CCAa---CCG-CACCG--------------ACCGGa-----GG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 111584 | 0.73 | 0.264654 |
Target: 5'- cUCCCugagcgGGGGgcccGGCGgGGC-GGCCUCCu -3' miRNA: 3'- -AGGG------CCCCaa--CCGCaCCGaCCGGAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 109947 | 0.68 | 0.466395 |
Target: 5'- aUCCCGGcGGacgucaUGGCacaacagacccGcGGCgUGGCCUCCg -3' miRNA: 3'- -AGGGCC-CCa-----ACCG-----------CaCCG-ACCGGAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 109372 | 0.66 | 0.616803 |
Target: 5'- gCCCGGGGagcaGCG-GGCUGcGCggCCg -3' miRNA: 3'- aGGGCCCCaac-CGCaCCGAC-CGgaGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 108837 | 0.68 | 0.478895 |
Target: 5'- gCCCGuGGGcgucuggacgacgGGCG-GGCUGGCgUUCg -3' miRNA: 3'- aGGGC-CCCaa-----------CCGCaCCGACCGgAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 102022 | 0.68 | 0.475307 |
Target: 5'- --gCGGGGUagcggGGUGguugGGCgggGGUCUCCg -3' miRNA: 3'- aggGCCCCAa----CCGCa---CCGa--CCGGAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 96981 | 0.66 | 0.626534 |
Target: 5'- aCCgCGGcGGgcGGCGgGGCcagGGCCggcCCg -3' miRNA: 3'- aGG-GCC-CCaaCCGCaCCGa--CCGGa--GG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 96694 | 0.66 | 0.597378 |
Target: 5'- gUCCGGGaGUuuauggUGGCGgcgguggGGUcgGGCCUCa -3' miRNA: 3'- aGGGCCC-CA------ACCGCa------CCGa-CCGGAGg -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 90850 | 0.66 | 0.636269 |
Target: 5'- gUCCCGGcg--GGCGUGa-UGGCgUCCa -3' miRNA: 3'- -AGGGCCccaaCCGCACcgACCGgAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 88020 | 0.68 | 0.466395 |
Target: 5'- cUCCCGGGGgcgcUUGGcCGgggagGGCagGGCCgCUg -3' miRNA: 3'- -AGGGCCCC----AACC-GCa----CCGa-CCGGaGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 86895 | 0.7 | 0.406602 |
Target: 5'- -gCCGGGaaccccGGCGUGGagcgccgGGCCUCCc -3' miRNA: 3'- agGGCCCcaa---CCGCACCga-----CCGGAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 81792 | 0.68 | 0.466395 |
Target: 5'- cCCCGaGGGgUGGCGUccGCcGGCaCUCCc -3' miRNA: 3'- aGGGC-CCCaACCGCAc-CGaCCG-GAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 80246 | 0.68 | 0.493381 |
Target: 5'- aCCCGGGGccuccuguucGGCacgcGGCUGGCCgacuggcgCCg -3' miRNA: 3'- aGGGCCCCaa--------CCGca--CCGACCGGa-------GG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 77330 | 0.68 | 0.466395 |
Target: 5'- gCCgCGGGGUauguaaaGGCGacucGGCUGGCC-CUg -3' miRNA: 3'- aGG-GCCCCAa------CCGCa---CCGACCGGaGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 74394 | 0.7 | 0.390421 |
Target: 5'- gCCCGGGGgccgUGGCGccGGC-GGaCCUgaCCg -3' miRNA: 3'- aGGGCCCCa---ACCGCa-CCGaCC-GGA--GG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 70325 | 0.67 | 0.549324 |
Target: 5'- gCCCGGcGGaggcgcgGGCGU-GCUGGCacccgCUCCu -3' miRNA: 3'- aGGGCC-CCaa-----CCGCAcCGACCG-----GAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 68779 | 0.73 | 0.270691 |
Target: 5'- gCCCGGGuGgccGGUGUGugUGGCCUCCu -3' miRNA: 3'- aGGGCCC-Caa-CCGCACcgACCGGAGG- -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 65851 | 0.66 | 0.578047 |
Target: 5'- gCCCGGaGGgUGGCcUGGUaguggUGGCCUg- -3' miRNA: 3'- aGGGCC-CCaACCGcACCG-----ACCGGAgg -5' |
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5509 | 3' | -63 | NC_001798.1 | + | 65766 | 0.66 | 0.616803 |
Target: 5'- -gCCGGGGcUGGCGUcGUUGaacGCCUgCa -3' miRNA: 3'- agGGCCCCaACCGCAcCGAC---CGGAgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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