miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5509 3' -63 NC_001798.1 + 58880 0.66 0.578047
Target:  5'- gUCCCGGGcccggaacccccGgaGGCGc-GCcGGCCUCCc -3'
miRNA:   3'- -AGGGCCC------------CaaCCGCacCGaCCGGAGG- -5'
5509 3' -63 NC_001798.1 + 113978 0.66 0.578047
Target:  5'- -gCCGGcGGUgaGGCGUugugcgggaggGGCuUGGCCUUCc -3'
miRNA:   3'- agGGCC-CCAa-CCGCA-----------CCG-ACCGGAGG- -5'
5509 3' -63 NC_001798.1 + 153808 0.67 0.56939
Target:  5'- --gCGGGGggcaggcggcggcaGGCGcGGCgugcggGGCCUCCg -3'
miRNA:   3'- aggGCCCCaa------------CCGCaCCGa-----CCGGAGG- -5'
5509 3' -63 NC_001798.1 + 135025 0.67 0.56843
Target:  5'- cCCCGcGGGcaUGGCc-GGCcgUGGCCUCg -3'
miRNA:   3'- aGGGC-CCCa-ACCGcaCCG--ACCGGAGg -5'
5509 3' -63 NC_001798.1 + 8084 0.67 0.56843
Target:  5'- gUCCCGGGGacaGG-GUGGUUGGUgUa- -3'
miRNA:   3'- -AGGGCCCCaa-CCgCACCGACCGgAgg -5'
5509 3' -63 NC_001798.1 + 135246 0.67 0.562679
Target:  5'- gCCCGGGGgcgGGCGggccuggaaaGGCUggacgcgcugguggcGGCCgCCc -3'
miRNA:   3'- aGGGCCCCaa-CCGCa---------CCGA---------------CCGGaGG- -5'
5509 3' -63 NC_001798.1 + 43473 0.67 0.558854
Target:  5'- aCgCGGGGgcgGGCGUGag-GGCCgCCg -3'
miRNA:   3'- aGgGCCCCaa-CCGCACcgaCCGGaGG- -5'
5509 3' -63 NC_001798.1 + 24714 0.67 0.558854
Target:  5'- gCCCGGGGcccGCG-GGCgcGGCCgccCCg -3'
miRNA:   3'- aGGGCCCCaacCGCaCCGa-CCGGa--GG- -5'
5509 3' -63 NC_001798.1 + 24153 0.67 0.556945
Target:  5'- aCCUGGGGUacgccaUGGCGgcgGGCcgcuucggcuggGGCCUg- -3'
miRNA:   3'- aGGGCCCCA------ACCGCa--CCGa-----------CCGGAgg -5'
5509 3' -63 NC_001798.1 + 148366 0.67 0.55599
Target:  5'- cUCCCagccagggugaggaGGGGcgGGCGUGGCgGGCa--- -3'
miRNA:   3'- -AGGG--------------CCCCaaCCGCACCGaCCGgagg -5'
5509 3' -63 NC_001798.1 + 33275 0.67 0.549324
Target:  5'- gUCuuGGuGGgugGGCG-GGCUGGCUggCg -3'
miRNA:   3'- -AGggCC-CCaa-CCGCaCCGACCGGagG- -5'
5509 3' -63 NC_001798.1 + 59770 0.67 0.549324
Target:  5'- uUCCCGGcGGUUccgggaacgcgGGCGguacccgGGcCUGGcCCUCg -3'
miRNA:   3'- -AGGGCC-CCAA-----------CCGCa------CC-GACC-GGAGg -5'
5509 3' -63 NC_001798.1 + 70325 0.67 0.549324
Target:  5'- gCCCGGcGGaggcgcgGGCGU-GCUGGCacccgCUCCu -3'
miRNA:   3'- aGGGCC-CCaa-----CCGCAcCGACCG-----GAGG- -5'
5509 3' -63 NC_001798.1 + 32377 0.67 0.539845
Target:  5'- gCCCGGGGcccGCGacccGGCgcccGGCCUCa -3'
miRNA:   3'- aGGGCCCCaacCGCa---CCGa---CCGGAGg -5'
5509 3' -63 NC_001798.1 + 27699 0.67 0.530422
Target:  5'- cCCCGGGGgaaaagaGGCGgGGCgGGagUCCc -3'
miRNA:   3'- aGGGCCCCaa-----CCGCaCCGaCCggAGG- -5'
5509 3' -63 NC_001798.1 + 11171 0.67 0.52106
Target:  5'- aCCacgauGGGGgcGGUGgGGCgGGCCUgCCg -3'
miRNA:   3'- aGGg----CCCCaaCCGCaCCGaCCGGA-GG- -5'
5509 3' -63 NC_001798.1 + 15186 0.67 0.52106
Target:  5'- gUUCGGGGggUGGgGgGGCUGGCgagCCg -3'
miRNA:   3'- aGGGCCCCa-ACCgCaCCGACCGga-GG- -5'
5509 3' -63 NC_001798.1 + 4632 0.68 0.509911
Target:  5'- cUCCGGGGggGGCGacgGGaucgugcgaacGGCCUCg -3'
miRNA:   3'- aGGGCCCCaaCCGCa--CCga---------CCGGAGg -5'
5509 3' -63 NC_001798.1 + 23830 0.68 0.508063
Target:  5'- cCCCGGGGcgcgugcuguacGGCG-GGCUGGgCgacagCCg -3'
miRNA:   3'- aGGGCCCCaa----------CCGCaCCGACCgGa----GG- -5'
5509 3' -63 NC_001798.1 + 18216 0.68 0.502535
Target:  5'- cUCgCCGGGGgacggugGGCGggaagGGUggaUGGUUUCCg -3'
miRNA:   3'- -AG-GGCCCCaa-----CCGCa----CCG---ACCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.