miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 55009 0.71 0.211508
Target:  5'- -gCCGGCggGGCCGCCCUGCCGggagacgcccCGGaCUCc -3'
miRNA:   3'- caGGCCG--CCGGUGGGGCGGC----------GUC-GAG- -5'
5510 3' -66.6 NC_001798.1 + 94989 0.71 0.197255
Target:  5'- --gCGGCGGCCgccuggGCCCCGCaggGCGGCg- -3'
miRNA:   3'- cagGCCGCCGG------UGGGGCGg--CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 75457 0.71 0.197255
Target:  5'- -gCCggGGUGGCCgGCCCgGCCGCGGCc- -3'
miRNA:   3'- caGG--CCGCCGG-UGGGgCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 48170 0.71 0.192693
Target:  5'- -cCUGGCGGCCACgCaCGCC-CGGCUg -3'
miRNA:   3'- caGGCCGCCGGUGgG-GCGGcGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 114100 0.71 0.216453
Target:  5'- -gCC-GCGGCCAUCCUGCCcacCGGCUCc -3'
miRNA:   3'- caGGcCGCCGGUGGGGCGGc--GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 137973 0.71 0.211508
Target:  5'- cUCCaGCGcccCCGCCUgggcgCGCCGCAGCUCg -3'
miRNA:   3'- cAGGcCGCc--GGUGGG-----GCGGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 145726 0.71 0.221496
Target:  5'- -cCCGGCcccGGCCcgcGCCCCGCCGCcacacccacGGCa- -3'
miRNA:   3'- caGGCCG---CCGG---UGGGGCGGCG---------UCGag -5'
5510 3' -66.6 NC_001798.1 + 19386 0.7 0.237229
Target:  5'- aUCCGGCGacCCACCCCa-CGCAGCg- -3'
miRNA:   3'- cAGGCCGCc-GGUGGGGcgGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 134915 0.7 0.237229
Target:  5'- -gCCGGCcGCCGCCgCCGCCGaguCGGCg- -3'
miRNA:   3'- caGGCCGcCGGUGG-GGCGGC---GUCGag -5'
5510 3' -66.6 NC_001798.1 + 102520 0.7 0.237229
Target:  5'- uGUCCGuaGGCCACCguCC-CCGCGGC-Cg -3'
miRNA:   3'- -CAGGCcgCCGGUGG--GGcGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 97005 0.7 0.237229
Target:  5'- -gCCGGCccGCCG-CCCGCCGaUAGCUCu -3'
miRNA:   3'- caGGCCGc-CGGUgGGGCGGC-GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 135767 0.7 0.242127
Target:  5'- cUCCGGCGGCCggccgccGgCCCGCCGgAGg-- -3'
miRNA:   3'- cAGGCCGCCGG-------UgGGGCGGCgUCgag -5'
5510 3' -66.6 NC_001798.1 + 28354 0.7 0.242677
Target:  5'- -gCCGGCGGCgGCCCC-CCGCGu--- -3'
miRNA:   3'- caGGCCGCCGgUGGGGcGGCGUcgag -5'
5510 3' -66.6 NC_001798.1 + 2625 0.7 0.248229
Target:  5'- -cCCGGCGG-CGCCCUGgCCGgGGCg- -3'
miRNA:   3'- caGGCCGCCgGUGGGGC-GGCgUCGag -5'
5510 3' -66.6 NC_001798.1 + 22860 0.7 0.248229
Target:  5'- -cCCGGaCcGUCGCCCCGCCGCgcggcccgGGUUCg -3'
miRNA:   3'- caGGCC-GcCGGUGGGGCGGCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 87159 0.7 0.248229
Target:  5'- -aUCGGgGGCUgcuGCCCCGCgUGCAGCg- -3'
miRNA:   3'- caGGCCgCCGG---UGGGGCG-GCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 5179 0.7 0.248229
Target:  5'- aUCCuGGCGGCCGCgUCgguaGCCGC-GCUCc -3'
miRNA:   3'- cAGG-CCGCCGGUGgGG----CGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 1472 0.7 0.250479
Target:  5'- aGUCCGGCGcGCCgggcgccauggcgucGCCCgCGCCcgagGCGGCg- -3'
miRNA:   3'- -CAGGCCGC-CGG---------------UGGG-GCGG----CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 25197 0.7 0.231883
Target:  5'- -gCCGccGCGGCCGCCgCGCCccGCGGCg- -3'
miRNA:   3'- caGGC--CGCCGGUGGgGCGG--CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 35556 0.7 0.226639
Target:  5'- -gCCGGCccGGCCcgGCCCCGgagcCCGCGGCg- -3'
miRNA:   3'- caGGCCG--CCGG--UGGGGC----GGCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.