miRNA display CGI


Results 41 - 60 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 97279 0.71 0.211508
Target:  5'- cGUUCGGgGGCCACCUgGCgGC-GCUg -3'
miRNA:   3'- -CAGGCCgCCGGUGGGgCGgCGuCGAg -5'
5510 3' -66.6 NC_001798.1 + 137973 0.71 0.211508
Target:  5'- cUCCaGCGcccCCGCCUgggcgCGCCGCAGCUCg -3'
miRNA:   3'- cAGGcCGCc--GGUGGG-----GCGGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 55009 0.71 0.211508
Target:  5'- -gCCGGCggGGCCGCCCUGCCGggagacgcccCGGaCUCc -3'
miRNA:   3'- caGGCCG--CCGGUGGGGCGGC----------GUC-GAG- -5'
5510 3' -66.6 NC_001798.1 + 114100 0.71 0.216453
Target:  5'- -gCC-GCGGCCAUCCUGCCcacCGGCUCc -3'
miRNA:   3'- caGGcCGCCGGUGGGGCGGc--GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 51931 0.71 0.216453
Target:  5'- --gUGGgGGCCGCCgCCguGCCGCuGCUCa -3'
miRNA:   3'- cagGCCgCCGGUGG-GG--CGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 78285 0.71 0.216453
Target:  5'- -cCUGGCGGCCGCCgCGgagcagauauCCGCGGCcCg -3'
miRNA:   3'- caGGCCGCCGGUGGgGC----------GGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 145726 0.71 0.221496
Target:  5'- -cCCGGCcccGGCCcgcGCCCCGCCGCcacacccacGGCa- -3'
miRNA:   3'- caGGCCG---CCGG---UGGGGCGGCG---------UCGag -5'
5510 3' -66.6 NC_001798.1 + 104150 0.7 0.226639
Target:  5'- -gCCaGUGGCCGCCCCGCCugGGCg- -3'
miRNA:   3'- caGGcCGCCGGUGGGGCGGcgUCGag -5'
5510 3' -66.6 NC_001798.1 + 43526 0.7 0.226639
Target:  5'- --gCGGCGGCCGCgucuCCCGCCaggGCGGUUUc -3'
miRNA:   3'- cagGCCGCCGGUG----GGGCGG---CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 35556 0.7 0.226639
Target:  5'- -gCCGGCccGGCCcgGCCCCGgagcCCGCGGCg- -3'
miRNA:   3'- caGGCCG--CCGG--UGGGGC----GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 25456 0.7 0.226639
Target:  5'- -cCCGGCGG-CGCgCCCGCCGCcuucGGCcCg -3'
miRNA:   3'- caGGCCGCCgGUG-GGGCGGCG----UCGaG- -5'
5510 3' -66.6 NC_001798.1 + 25197 0.7 0.231883
Target:  5'- -gCCGccGCGGCCGCCgCGCCccGCGGCg- -3'
miRNA:   3'- caGGC--CGCCGGUGGgGCGG--CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 94438 0.7 0.231883
Target:  5'- --aCGGcCGGCCAgacggcCCCCGCCgagaGCAGCUUc -3'
miRNA:   3'- cagGCC-GCCGGU------GGGGCGG----CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 33634 0.7 0.231883
Target:  5'- -cCCGGCGcCCACCCCGcCCGCAcaccuGCcCg -3'
miRNA:   3'- caGGCCGCcGGUGGGGC-GGCGU-----CGaG- -5'
5510 3' -66.6 NC_001798.1 + 19386 0.7 0.237229
Target:  5'- aUCCGGCGacCCACCCCa-CGCAGCg- -3'
miRNA:   3'- cAGGCCGCc-GGUGGGGcgGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 134915 0.7 0.237229
Target:  5'- -gCCGGCcGCCGCCgCCGCCGaguCGGCg- -3'
miRNA:   3'- caGGCCGcCGGUGG-GGCGGC---GUCGag -5'
5510 3' -66.6 NC_001798.1 + 37412 0.7 0.237229
Target:  5'- gGUCCGuGgGGCCggccgaccaACCCCGCgUGCAaaGCUCg -3'
miRNA:   3'- -CAGGC-CgCCGG---------UGGGGCG-GCGU--CGAG- -5'
5510 3' -66.6 NC_001798.1 + 102520 0.7 0.237229
Target:  5'- uGUCCGuaGGCCACCguCC-CCGCGGC-Cg -3'
miRNA:   3'- -CAGGCcgCCGGUGG--GGcGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 97005 0.7 0.237229
Target:  5'- -gCCGGCccGCCG-CCCGCCGaUAGCUCu -3'
miRNA:   3'- caGGCCGc-CGGUgGGGCGGC-GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 135767 0.7 0.242127
Target:  5'- cUCCGGCGGCCggccgccGgCCCGCCGgAGg-- -3'
miRNA:   3'- cAGGCCGCCGG-------UgGGGCGGCgUCgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.