miRNA display CGI


Results 41 - 60 of 184 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 29794 0.66 0.397677
Target:  5'- cUCCcgGGCGGaCCccgGCCCCgagcggccGCCGCGGCa- -3'
miRNA:   3'- cAGG--CCGCC-GG---UGGGG--------CGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 2182 0.66 0.395288
Target:  5'- gGUCgGGCaccuggcgcauccaGGCCGCCgCGCggCGCAGCg- -3'
miRNA:   3'- -CAGgCCG--------------CCGGUGGgGCG--GCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 75273 0.67 0.392118
Target:  5'- gGUCCGGCucgcggcgcgcgauGCCGCCCUggcccgcgaggugGCCGCguguucgcAGCUCa -3'
miRNA:   3'- -CAGGCCGc-------------CGGUGGGG-------------CGGCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 104665 0.67 0.389751
Target:  5'- -cCCGugcucguaGCGGCCGCCggCCGCCGCGaacugcGCUUu -3'
miRNA:   3'- caGGC--------CGCCGGUGG--GGCGGCGU------CGAG- -5'
5510 3' -66.6 NC_001798.1 + 31848 0.67 0.389751
Target:  5'- -cCCGGU-GCCGCCCCccacGCCGCGGa-- -3'
miRNA:   3'- caGGCCGcCGGUGGGG----CGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 53449 0.67 0.389751
Target:  5'- uGUCgGGCGGCCAgCUgaGCCGC-GC-Ca -3'
miRNA:   3'- -CAGgCCGCCGGUgGGg-CGGCGuCGaG- -5'
5510 3' -66.6 NC_001798.1 + 2566 0.67 0.388964
Target:  5'- ---gGGCGGCCGCggggcggggggcgUCCG-CGCGGCUCu -3'
miRNA:   3'- caggCCGCCGGUG-------------GGGCgGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 43879 0.67 0.381928
Target:  5'- -cCCaGCGGCCgcgGCCCCGCgggaGUacuGGCUCu -3'
miRNA:   3'- caGGcCGCCGG---UGGGGCGg---CG---UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 27984 0.67 0.381928
Target:  5'- -cCCGGCGcuccagccguGCCgcGCCCCGgCGC-GCUCc -3'
miRNA:   3'- caGGCCGC----------CGG--UGGGGCgGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 126468 0.67 0.381928
Target:  5'- gGUCCGaGaCGGCCAugaccucgcCCCCGUCGCccccCUCg -3'
miRNA:   3'- -CAGGC-C-GCCGGU---------GGGGCGGCGuc--GAG- -5'
5510 3' -66.6 NC_001798.1 + 44162 0.67 0.374211
Target:  5'- -cCCGGCGGUaCGCCCCcaGCaCGCGcGcCUCg -3'
miRNA:   3'- caGGCCGCCG-GUGGGG--CG-GCGU-C-GAG- -5'
5510 3' -66.6 NC_001798.1 + 35015 0.67 0.374211
Target:  5'- -cUCGGCGGCCaaGCCCCGgcCCGCccggGGgUCc -3'
miRNA:   3'- caGGCCGCCGG--UGGGGC--GGCG----UCgAG- -5'
5510 3' -66.6 NC_001798.1 + 104172 0.67 0.373445
Target:  5'- cGUCCaggcacagGGCGGCCAgCCCCGgaaacaaCUGgguCAGCUCg -3'
miRNA:   3'- -CAGG--------CCGCCGGU-GGGGC-------GGC---GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 27105 0.67 0.3666
Target:  5'- gGUCaGGUGGCCcgaGCCCCcCCGCAGg-- -3'
miRNA:   3'- -CAGgCCGCCGG---UGGGGcGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 92497 0.67 0.3666
Target:  5'- uUCaCGGCGGCCGCCaCCugGCCccCAGCa- -3'
miRNA:   3'- cAG-GCCGCCGGUGG-GG--CGGc-GUCGag -5'
5510 3' -66.6 NC_001798.1 + 31205 0.67 0.3666
Target:  5'- -aCCGGCGcccccuGgCGCCCCGCggaGCAGCa- -3'
miRNA:   3'- caGGCCGC------CgGUGGGGCGg--CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 31240 0.67 0.3666
Target:  5'- --gCGGCGG-CGCCCCGuuGCgGGCg- -3'
miRNA:   3'- cagGCCGCCgGUGGGGCggCG-UCGag -5'
5510 3' -66.6 NC_001798.1 + 109360 0.67 0.3666
Target:  5'- -gCCGGCcuGGCCGCCCgGggaGCAGCg- -3'
miRNA:   3'- caGGCCG--CCGGUGGGgCgg-CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 122368 0.67 0.359097
Target:  5'- ---gGGCGGgcgacgcgcCCGCCCC-CCGCGGCUg -3'
miRNA:   3'- caggCCGCC---------GGUGGGGcGGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 4750 0.67 0.359097
Target:  5'- -gCCGG-GGCCGCCUCGUCGgcauCGGCaUCg -3'
miRNA:   3'- caGGCCgCCGGUGGGGCGGC----GUCG-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.