miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 57741 0.73 0.151966
Target:  5'- -aCCGGUGGgCGCgCCCGgCGCAGCg- -3'
miRNA:   3'- caGGCCGCCgGUG-GGGCgGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 52519 0.72 0.167227
Target:  5'- --gCGGCGGCCGCgCgCGCCGUgcuggcgacggGGCUCa -3'
miRNA:   3'- cagGCCGCCGGUGgG-GCGGCG-----------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 81810 0.72 0.175362
Target:  5'- -gCCGGCacuccccgccccGGUCGCCCCGUCGCcGCUUc -3'
miRNA:   3'- caGGCCG------------CCGGUGGGGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 82164 0.72 0.175362
Target:  5'- -gCCGaccacGCGGCCGCgguuUCCGCCGCAGCg- -3'
miRNA:   3'- caGGC-----CGCCGGUG----GGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 29040 0.72 0.17956
Target:  5'- -cCCGGCGaCCGCCCCGCgC-CGGCUUc -3'
miRNA:   3'- caGGCCGCcGGUGGGGCG-GcGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 3995 0.72 0.17956
Target:  5'- -gCCGG-GGCCGCCCgGCCGUgaAGCg- -3'
miRNA:   3'- caGGCCgCCGGUGGGgCGGCG--UCGag -5'
5510 3' -66.6 NC_001798.1 + 74410 0.72 0.17956
Target:  5'- -gCCGGCGGaCCugaCCGCCGCGGCc- -3'
miRNA:   3'- caGGCCGCC-GGuggGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 134167 0.72 0.17956
Target:  5'- -gCCGucGCGGCCGCCCgCGCCGCgacGGCc- -3'
miRNA:   3'- caGGC--CGCCGGUGGG-GCGGCG---UCGag -5'
5510 3' -66.6 NC_001798.1 + 5591 0.72 0.17956
Target:  5'- -gCCGGCgaGGUCGCCCCGUUgguccgcggGCGGCUCc -3'
miRNA:   3'- caGGCCG--CCGGUGGGGCGG---------CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 78348 0.72 0.17956
Target:  5'- gGUCCGGaccggGGUCACCCUGCCGUgucccAGCg- -3'
miRNA:   3'- -CAGGCCg----CCGGUGGGGCGGCG-----UCGag -5'
5510 3' -66.6 NC_001798.1 + 7887 0.72 0.188225
Target:  5'- --gCGGaCGGCCGCCaugaauuuuaUCGCCGCGGCUg -3'
miRNA:   3'- cagGCC-GCCGGUGG----------GGCGGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 94189 0.72 0.188225
Target:  5'- -aCCuGCgGGCCGugccCCCUGCUGCAGCUCc -3'
miRNA:   3'- caGGcCG-CCGGU----GGGGCGGCGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 109071 0.72 0.188225
Target:  5'- uGUCCuGGgGGCCccgACgCCCGCCGacaaCGGCUCg -3'
miRNA:   3'- -CAGG-CCgCCGG---UG-GGGCGGC----GUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 35609 0.71 0.192693
Target:  5'- cUCCGGgGGCuccgCACUCUGCC-CGGCUCg -3'
miRNA:   3'- cAGGCCgCCG----GUGGGGCGGcGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 48170 0.71 0.192693
Target:  5'- -cCUGGCGGCCACgCaCGCC-CGGCUg -3'
miRNA:   3'- caGGCCGCCGGUGgG-GCGGcGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 94989 0.71 0.197255
Target:  5'- --gCGGCGGCCgccuggGCCCCGCaggGCGGCg- -3'
miRNA:   3'- cagGCCGCCGG------UGGGGCGg--CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 75457 0.71 0.197255
Target:  5'- -gCCggGGUGGCCgGCCCgGCCGCGGCc- -3'
miRNA:   3'- caGG--CCGCCGG-UGGGgCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 105215 0.71 0.201911
Target:  5'- --aCGGC-GCUGCCCCGuCCGCAGCg- -3'
miRNA:   3'- cagGCCGcCGGUGGGGC-GGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 15319 0.71 0.201911
Target:  5'- -gUUGGCGGCCgaggGCCCCGgCGCGGUa- -3'
miRNA:   3'- caGGCCGCCGG----UGGGGCgGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 55009 0.71 0.211508
Target:  5'- -gCCGGCggGGCCGCCCUGCCGggagacgcccCGGaCUCc -3'
miRNA:   3'- caGGCCG--CCGGUGGGGCGGC----------GUC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.