miRNA display CGI


Results 21 - 40 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 4904 0.75 0.100321
Target:  5'- aUCCGG-GGCCGCCggucgucuCCGCCGCGGCcCg -3'
miRNA:   3'- cAGGCCgCCGGUGG--------GGCGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 5179 0.7 0.248229
Target:  5'- aUCCuGGCGGCCGCgUCgguaGCCGC-GCUCc -3'
miRNA:   3'- cAGG-CCGCCGGUGgGG----CGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 5386 0.74 0.134673
Target:  5'- cGUCCguGGCGGCgGCCcguuggucgcgCCGCCGCcGCUCc -3'
miRNA:   3'- -CAGG--CCGCCGgUGG-----------GGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 5591 0.72 0.17956
Target:  5'- -gCCGGCgaGGUCGCCCCGUUgguccgcggGCGGCUCc -3'
miRNA:   3'- caGGCCG--CCGGUGGGGCGG---------CGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 7887 0.72 0.188225
Target:  5'- --gCGGaCGGCCGCCaugaauuuuaUCGCCGCGGCUg -3'
miRNA:   3'- cagGCC-GCCGGUGG----------GGCGGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 15319 0.71 0.201911
Target:  5'- -gUUGGCGGCCgaggGCCCCGgCGCGGUa- -3'
miRNA:   3'- caGGCCGCCGG----UGGGGCgGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 15553 0.69 0.283767
Target:  5'- -cCCGGCcccgGGCguuGCCgCCGCCGCGGCg- -3'
miRNA:   3'- caGGCCG----CCGg--UGG-GGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 19386 0.7 0.237229
Target:  5'- aUCCGGCGacCCACCCCa-CGCAGCg- -3'
miRNA:   3'- cAGGCCGCc-GGUGGGGcgGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 22860 0.7 0.248229
Target:  5'- -cCCGGaCcGUCGCCCCGCCGCgcggcccgGGUUCg -3'
miRNA:   3'- caGGCC-GcCGGUGGGGCGGCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 23344 0.76 0.090833
Target:  5'- -gCCGGCGcGCC-CCCCGCCgGC-GCUCg -3'
miRNA:   3'- caGGCCGC-CGGuGGGGCGG-CGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 24722 0.78 0.060766
Target:  5'- -cCCGcgggcGCGGCCGCCCCGCCGCAcGC-Cg -3'
miRNA:   3'- caGGC-----CGCCGGUGGGGCGGCGU-CGaG- -5'
5510 3' -66.6 NC_001798.1 + 24842 0.67 0.351701
Target:  5'- -gCCGGCGGCaGCgaggCCGCCGUGGC-Cg -3'
miRNA:   3'- caGGCCGCCGgUGg---GGCGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 24940 0.66 0.405707
Target:  5'- cUCC-GCcGCCGCgCCGCCGCGgaccuGCUCu -3'
miRNA:   3'- cAGGcCGcCGGUGgGGCGGCGU-----CGAG- -5'
5510 3' -66.6 NC_001798.1 + 25146 0.68 0.316362
Target:  5'- -cCCcGCGGCCGCCCCucCCGCGGg-- -3'
miRNA:   3'- caGGcCGCCGGUGGGGc-GGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 25197 0.7 0.231883
Target:  5'- -gCCGccGCGGCCGCCgCGCCccGCGGCg- -3'
miRNA:   3'- caGGC--CGCCGGUGGgGCGG--CGUCGag -5'
5510 3' -66.6 NC_001798.1 + 25456 0.7 0.226639
Target:  5'- -cCCGGCGG-CGCgCCCGCCGCcuucGGCcCg -3'
miRNA:   3'- caGGCCGCCgGUG-GGGCGGCG----UCGaG- -5'
5510 3' -66.6 NC_001798.1 + 25967 0.66 0.413837
Target:  5'- -gCCGGCGGCgCgggACCUgCGCCGCAccguGCUg -3'
miRNA:   3'- caGGCCGCCG-G---UGGG-GCGGCGU----CGAg -5'
5510 3' -66.6 NC_001798.1 + 27105 0.67 0.3666
Target:  5'- gGUCaGGUGGCCcgaGCCCCcCCGCAGg-- -3'
miRNA:   3'- -CAGgCCGCCGG---UGGGGcGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 27984 0.67 0.381928
Target:  5'- -cCCGGCGcuccagccguGCCgcGCCCCGgCGC-GCUCc -3'
miRNA:   3'- caGGCCGC----------CGG--UGGGGCgGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 28354 0.7 0.242677
Target:  5'- -gCCGGCGGCgGCCCC-CCGCGu--- -3'
miRNA:   3'- caGGCCGCCGgUGGGGcGGCGUcgag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.