Results 61 - 80 of 184 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5510 | 3' | -66.6 | NC_001798.1 | + | 28354 | 0.7 | 0.242677 |
Target: 5'- -gCCGGCGGCgGCCCC-CCGCGu--- -3' miRNA: 3'- caGGCCGCCGgUGGGGcGGCGUcgag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 5179 | 0.7 | 0.248229 |
Target: 5'- aUCCuGGCGGCCGCgUCgguaGCCGC-GCUCc -3' miRNA: 3'- cAGG-CCGCCGGUGgGG----CGGCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 87159 | 0.7 | 0.248229 |
Target: 5'- -aUCGGgGGCUgcuGCCCCGCgUGCAGCg- -3' miRNA: 3'- caGGCCgCCGG---UGGGGCG-GCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2625 | 0.7 | 0.248229 |
Target: 5'- -cCCGGCGG-CGCCCUGgCCGgGGCg- -3' miRNA: 3'- caGGCCGCCgGUGGGGC-GGCgUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 121694 | 0.7 | 0.248229 |
Target: 5'- -gCUGGgGGCCGCggcuCCCGCCGCcGCg- -3' miRNA: 3'- caGGCCgCCGGUG----GGGCGGCGuCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 22860 | 0.7 | 0.248229 |
Target: 5'- -cCCGGaCcGUCGCCCCGCCGCgcggcccgGGUUCg -3' miRNA: 3'- caGGCC-GcCGGUGGGGCGGCG--------UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 1472 | 0.7 | 0.250479 |
Target: 5'- aGUCCGGCGcGCCgggcgccauggcgucGCCCgCGCCcgagGCGGCg- -3' miRNA: 3'- -CAGGCCGC-CGG---------------UGGG-GCGG----CGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 1144 | 0.69 | 0.259648 |
Target: 5'- -cUCGGCGGCguggccaGCCCCGCgGCGGUc- -3' miRNA: 3'- caGGCCGCCGg------UGGGGCGgCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 58005 | 0.69 | 0.259648 |
Target: 5'- --aUGGCGaUCACCCCGaCCGCcGGCUCg -3' miRNA: 3'- cagGCCGCcGGUGGGGC-GGCG-UCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 48367 | 0.69 | 0.265517 |
Target: 5'- -cCCGG-GGCCGCCCCG-CGgGGCg- -3' miRNA: 3'- caGGCCgCCGGUGGGGCgGCgUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 126740 | 0.69 | 0.265517 |
Target: 5'- cUUCGcGCGGCCGCaCCCacgacauCCGCGGCUUu -3' miRNA: 3'- cAGGC-CGCCGGUG-GGGc------GGCGUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 2038 | 0.69 | 0.267298 |
Target: 5'- -gCCGGUugcccagGGCCGCcagcaggcaggacagCCCGCCGC-GCUCg -3' miRNA: 3'- caGGCCG-------CCGGUG---------------GGGCGGCGuCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 153184 | 0.69 | 0.271492 |
Target: 5'- -gCCGGCcgaGGCCGCCCuCGCCG--GUUCa -3' miRNA: 3'- caGGCCG---CCGGUGGG-GCGGCguCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 134196 | 0.69 | 0.277575 |
Target: 5'- -cCCGGCcGCCuCCCCGCUGgAGCc- -3' miRNA: 3'- caGGCCGcCGGuGGGGCGGCgUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 15553 | 0.69 | 0.283767 |
Target: 5'- -cCCGGCcccgGGCguuGCCgCCGCCGCGGCg- -3' miRNA: 3'- caGGCCG----CCGg--UGG-GGCGGCGUCGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 152235 | 0.69 | 0.283767 |
Target: 5'- --gCGGCGGCCGCUcggggccgggguCCGCCcgGgAGCUCg -3' miRNA: 3'- cagGCCGCCGGUGG------------GGCGG--CgUCGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 138406 | 0.69 | 0.283767 |
Target: 5'- --gCGGCGccaGCCACCCCGCgcuCGCugucGCUCu -3' miRNA: 3'- cagGCCGC---CGGUGGGGCG---GCGu---CGAG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 134961 | 0.69 | 0.283767 |
Target: 5'- -gCC-GCGGCCACCCaUGCCGCGuGCc- -3' miRNA: 3'- caGGcCGCCGGUGGG-GCGGCGU-CGag -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 68226 | 0.69 | 0.283767 |
Target: 5'- ---aGGCccGCCACCCCGCCGCGcGC-Ca -3' miRNA: 3'- caggCCGc-CGGUGGGGCGGCGU-CGaG- -5' |
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5510 | 3' | -66.6 | NC_001798.1 | + | 83731 | 0.69 | 0.283767 |
Target: 5'- -aCCGcccaccagauaGCGGCCcccagaaacaGCCCCGCCGcCAGCa- -3' miRNA: 3'- caGGC-----------CGCCGG----------UGGGGCGGC-GUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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