miRNA display CGI


Results 61 - 80 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5510 3' -66.6 NC_001798.1 + 4750 0.67 0.359097
Target:  5'- -gCCGG-GGCCGCCUCGUCGgcauCGGCaUCg -3'
miRNA:   3'- caGGCCgCCGGUGGGGCGGC----GUCG-AG- -5'
5510 3' -66.6 NC_001798.1 + 122368 0.67 0.359097
Target:  5'- ---gGGCGGgcgacgcgcCCGCCCC-CCGCGGCUg -3'
miRNA:   3'- caggCCGCC---------GGUGGGGcGGCGUCGAg -5'
5510 3' -66.6 NC_001798.1 + 124117 0.67 0.359097
Target:  5'- uUCCGccaacgcgcuGUGGCgCGcCCCCGCCGUGGCg- -3'
miRNA:   3'- cAGGC----------CGCCG-GU-GGGGCGGCGUCGag -5'
5510 3' -66.6 NC_001798.1 + 2439 0.67 0.351701
Target:  5'- -cCCGGCGGCUggcggcGCCagCCGCCcuGCGGgUCg -3'
miRNA:   3'- caGGCCGCCGG------UGG--GGCGG--CGUCgAG- -5'
5510 3' -66.6 NC_001798.1 + 40016 0.67 0.351701
Target:  5'- cGUCgCGGCGGCCcuCCUCGUC-CcGCUCc -3'
miRNA:   3'- -CAG-GCCGCCGGu-GGGGCGGcGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 115529 0.67 0.351701
Target:  5'- cGUCgCGGCcccGGCCgGCCCCGgCGCGGaCa- -3'
miRNA:   3'- -CAG-GCCG---CCGG-UGGGGCgGCGUC-Gag -5'
5510 3' -66.6 NC_001798.1 + 123817 0.67 0.351701
Target:  5'- -cCCGGaGGaaacccCCgACCCCGCCGCcgaacAGCUCg -3'
miRNA:   3'- caGGCCgCC------GG-UGGGGCGGCG-----UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 2093 0.67 0.351701
Target:  5'- cUCCGGgGGgggcCCGcCCCCGgCGCGGCcCg -3'
miRNA:   3'- cAGGCCgCC----GGU-GGGGCgGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 24842 0.67 0.351701
Target:  5'- -gCCGGCGGCaGCgaggCCGCCGUGGC-Cg -3'
miRNA:   3'- caGGCCGCCGgUGg---GGCGGCGUCGaG- -5'
5510 3' -66.6 NC_001798.1 + 76373 0.68 0.347316
Target:  5'- -cCUGGCGGCCuggcucucgguccugACCgaCGCCGCgacccaggGGCUCa -3'
miRNA:   3'- caGGCCGCCGG---------------UGGg-GCGGCG--------UCGAG- -5'
5510 3' -66.6 NC_001798.1 + 58476 0.68 0.344414
Target:  5'- -gCCGuGCGGCC-CCgUCGCCGCAGa-- -3'
miRNA:   3'- caGGC-CGCCGGuGG-GGCGGCGUCgag -5'
5510 3' -66.6 NC_001798.1 + 59837 0.68 0.344414
Target:  5'- -gCC-GCGGUCGCCCgCGUC-CGGCUCg -3'
miRNA:   3'- caGGcCGCCGGUGGG-GCGGcGUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 153845 0.68 0.344414
Target:  5'- cUCCGGC-GCCuuccCCCCGCCcucGCUCg -3'
miRNA:   3'- cAGGCCGcCGGu---GGGGCGGcguCGAG- -5'
5510 3' -66.6 NC_001798.1 + 58037 0.68 0.344414
Target:  5'- aUCC-GCGGCCGcaccagcacCCCCGCCGCAa--- -3'
miRNA:   3'- cAGGcCGCCGGU---------GGGGCGGCGUcgag -5'
5510 3' -66.6 NC_001798.1 + 112197 0.68 0.344414
Target:  5'- cGUCCcGCaGGCCGCgCUGgCGgAGCUCg -3'
miRNA:   3'- -CAGGcCG-CCGGUGgGGCgGCgUCGAG- -5'
5510 3' -66.6 NC_001798.1 + 137936 0.68 0.344414
Target:  5'- cUCCccCGGCCGCCcgguCCGCCGCGcgcuGCUCc -3'
miRNA:   3'- cAGGccGCCGGUGG----GGCGGCGU----CGAG- -5'
5510 3' -66.6 NC_001798.1 + 150808 0.68 0.344414
Target:  5'- --aCGGgGcGCCGCCgCUGCUGCuGCUCc -3'
miRNA:   3'- cagGCCgC-CGGUGG-GGCGGCGuCGAG- -5'
5510 3' -66.6 NC_001798.1 + 64267 0.68 0.337236
Target:  5'- -gCCGGCGaaCACCCCGCUGUuGgUCg -3'
miRNA:   3'- caGGCCGCcgGUGGGGCGGCGuCgAG- -5'
5510 3' -66.6 NC_001798.1 + 55770 0.68 0.330168
Target:  5'- -gCCGGCGcGCUgcaGCCgCCGaCCGCcuGCUCg -3'
miRNA:   3'- caGGCCGC-CGG---UGG-GGC-GGCGu-CGAG- -5'
5510 3' -66.6 NC_001798.1 + 47650 0.68 0.330168
Target:  5'- aGUCCGcGCGaCgACuUCCGCCGCGGCg- -3'
miRNA:   3'- -CAGGC-CGCcGgUG-GGGCGGCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.