Results 81 - 100 of 198 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5511 | 3' | -53.9 | NC_001798.1 | + | 119887 | 0.68 | 0.928017 |
Target: 5'- gGggGAucccgguCGGGGCCGCCAgguaaauggccAUGAUgaCCg -3' miRNA: 3'- gCuuCU-------GCUCCGGCGGU-----------UGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 85349 | 0.68 | 0.923178 |
Target: 5'- uGGAcACGGGGCCcuucGCCG-CGGCgUCCg -3' miRNA: 3'- gCUUcUGCUCCGG----CGGUuGCUGaAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 35279 | 0.68 | 0.923178 |
Target: 5'- aCGcGGGCGGGGCuCGggcucuCCGGCGGCUuaauggaucUCCg -3' miRNA: 3'- -GCuUCUGCUCCG-GC------GGUUGCUGA---------AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 28990 | 0.68 | 0.923178 |
Target: 5'- aGggGGCGGcGCCgGCCAACcGCgcgCCg -3' miRNA: 3'- gCuuCUGCUcCGG-CGGUUGcUGaa-GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 26505 | 0.68 | 0.923178 |
Target: 5'- gCGggGACGGugcuGGCCGCgGcggGCGGCggCg -3' miRNA: 3'- -GCuuCUGCU----CCGGCGgU---UGCUGaaGg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 107410 | 0.68 | 0.923178 |
Target: 5'- gGAGGACuGGGGCCGgCUGACGGgggucgCCg -3' miRNA: 3'- gCUUCUG-CUCCGGC-GGUUGCUgaa---GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 95688 | 0.68 | 0.923178 |
Target: 5'- gCGgcGGCgGGGGCgGCCGGCGuCgcCCg -3' miRNA: 3'- -GCuuCUG-CUCCGgCGGUUGCuGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 121867 | 0.68 | 0.923178 |
Target: 5'- gGGAGGCGAcacGGCCaccGCgGAgGACgugUCCa -3' miRNA: 3'- gCUUCUGCU---CCGG---CGgUUgCUGa--AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 134636 | 0.68 | 0.923178 |
Target: 5'- uCGAGGuguGCGAGGUCGgCCuGCGGCc-CCg -3' miRNA: 3'- -GCUUC---UGCUCCGGC-GGuUGCUGaaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 62567 | 0.68 | 0.923178 |
Target: 5'- --cGGACGucGCCGCCAcgucauccACGACgccCCg -3' miRNA: 3'- gcuUCUGCucCGGCGGU--------UGCUGaa-GG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 84495 | 0.68 | 0.923178 |
Target: 5'- uCGAAcGCGucccccgggcGGCCGCCGuAgGGCUUCCc -3' miRNA: 3'- -GCUUcUGCu---------CCGGCGGU-UgCUGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 25610 | 0.68 | 0.921522 |
Target: 5'- cCGggGGCGGgccccccccggaguGGuCCGCCGagcGCGGCgggcugUCCu -3' miRNA: 3'- -GCuuCUGCU--------------CC-GGCGGU---UGCUGa-----AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 122134 | 0.68 | 0.917575 |
Target: 5'- gGggGGCccccGGGCCGCgGGCGAggacgUCCu -3' miRNA: 3'- gCuuCUGc---UCCGGCGgUUGCUga---AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 77400 | 0.68 | 0.917575 |
Target: 5'- uGggGuCGGcGGCCGCCGACcugguagUCCa -3' miRNA: 3'- gCuuCuGCU-CCGGCGGUUGcuga---AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 3891 | 0.68 | 0.911734 |
Target: 5'- cCGggGGCGggGGGCCGgCCccgggccACGGCUcCCc -3' miRNA: 3'- -GCuuCUGC--UCCGGC-GGu------UGCUGAaGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 88041 | 0.68 | 0.911734 |
Target: 5'- gGAGGGCaGGGCCGCUgggggGGCgGGCUcgUCCc -3' miRNA: 3'- gCUUCUGcUCCGGCGG-----UUG-CUGA--AGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 8907 | 0.68 | 0.911734 |
Target: 5'- gCGAAGGUGGGGuuGCCGugacucACGAUUUUUa -3' miRNA: 3'- -GCUUCUGCUCCggCGGU------UGCUGAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 4744 | 0.68 | 0.911734 |
Target: 5'- cCGGAcGcCGGGGCCGCCucguCGGCaUCg -3' miRNA: 3'- -GCUU-CuGCUCCGGCGGuu--GCUGaAGg -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 149681 | 0.68 | 0.911137 |
Target: 5'- cCGGGcuCGGGGCCGCCcucgcguGGCGcguCUUCCu -3' miRNA: 3'- -GCUUcuGCUCCGGCGG-------UUGCu--GAAGG- -5' |
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5511 | 3' | -53.9 | NC_001798.1 | + | 50211 | 0.69 | 0.908116 |
Target: 5'- gGAcGGCGAGGagguggauaugacgcCCGCCGacgcccuggACGACUUCg -3' miRNA: 3'- gCUuCUGCUCC---------------GGCGGU---------UGCUGAAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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