miRNA display CGI


Results 61 - 80 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 71138 0.67 0.943204
Target:  5'- gCGGacGGACGcGGCCGUCuuCGACc-CCg -3'
miRNA:   3'- -GCU--UCUGCuCCGGCGGuuGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 153967 0.67 0.943204
Target:  5'- gCGAGGACGcGGCCGgCGcgcucuCGACcgcggUUCCc -3'
miRNA:   3'- -GCUUCUGCuCCGGCgGUu-----GCUG-----AAGG- -5'
5511 3' -53.9 NC_001798.1 + 136002 0.67 0.943204
Target:  5'- cCGggGGCGGGGa-GUCGGuCGGCgUCCc -3'
miRNA:   3'- -GCuuCUGCUCCggCGGUU-GCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 55910 0.67 0.942749
Target:  5'- gCGgcGACGAgcgcaaaGGCC-CCGACGAUcgcUCCg -3'
miRNA:   3'- -GCuuCUGCU-------CCGGcGGUUGCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 7885 0.67 0.941834
Target:  5'- ---uGGCGGacGGCCGCCAugaauuuuaucgccGCGGCUgcgCCc -3'
miRNA:   3'- gcuuCUGCU--CCGGCGGU--------------UGCUGAa--GG- -5'
5511 3' -53.9 NC_001798.1 + 86083 0.67 0.938554
Target:  5'- gGGAGuCGGGGCC-CCGGCuGCgcgCCg -3'
miRNA:   3'- gCUUCuGCUCCGGcGGUUGcUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 149931 0.67 0.938554
Target:  5'- gGAGGAgGAGGCgGC-GGCGACcgcggCCu -3'
miRNA:   3'- gCUUCUgCUCCGgCGgUUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 42276 0.67 0.938554
Target:  5'- aCGAAGACGGgcaauaaccGGCCGCacGCGGag-CCg -3'
miRNA:   3'- -GCUUCUGCU---------CCGGCGguUGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 134162 0.67 0.938554
Target:  5'- cCGggGcCGucgcGGCCGCCcgcgccGCGACggCCc -3'
miRNA:   3'- -GCuuCuGCu---CCGGCGGu-----UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 15554 0.68 0.935651
Target:  5'- cCGGccccGGGCGuuGCCGCCGccgcggcggggagugGCGACgacUCCa -3'
miRNA:   3'- -GCU----UCUGCucCGGCGGU---------------UGCUGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 22769 0.68 0.933667
Target:  5'- aCGAGGACGggggacgucuccGGGCCGCggcggaGACGACcggcggCCc -3'
miRNA:   3'- -GCUUCUGC------------UCCGGCGg-----UUGCUGaa----GG- -5'
5511 3' -53.9 NC_001798.1 + 100791 0.68 0.933667
Target:  5'- gGggGGCGGgugucGGCCGUCucggGCGugUccUCCu -3'
miRNA:   3'- gCuuCUGCU-----CCGGCGGu---UGCugA--AGG- -5'
5511 3' -53.9 NC_001798.1 + 113122 0.68 0.933667
Target:  5'- uGGuAGACGAGGCCGCguGUGGCg--- -3'
miRNA:   3'- gCU-UCUGCUCCGGCGguUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 25186 0.68 0.928542
Target:  5'- cCGccGACGccGCCGCCG-CGGCcgCCg -3'
miRNA:   3'- -GCuuCUGCucCGGCGGUuGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 149246 0.68 0.928542
Target:  5'- gCGggGGCGucGCCGgCCGGCGcggGCgcgCCc -3'
miRNA:   3'- -GCuuCUGCucCGGC-GGUUGC---UGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 91659 0.68 0.928542
Target:  5'- aGggGGCGuGGCCGCC-----CUUCUa -3'
miRNA:   3'- gCuuCUGCuCCGGCGGuugcuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 26187 0.68 0.928542
Target:  5'- cCGGcgcuGGACGgccGGGCCGCCGccucgggcgcggGCGACg-CCa -3'
miRNA:   3'- -GCU----UCUGC---UCCGGCGGU------------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 24168 0.68 0.928542
Target:  5'- uGgcGGCG-GGCCGCUu-CGGCUggggCCu -3'
miRNA:   3'- gCuuCUGCuCCGGCGGuuGCUGAa---GG- -5'
5511 3' -53.9 NC_001798.1 + 75561 0.68 0.928542
Target:  5'- gGcGGACGuGGCCGCCcacCGGCcccucaUCCa -3'
miRNA:   3'- gCuUCUGCuCCGGCGGuu-GCUGa-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 119887 0.68 0.928017
Target:  5'- gGggGAucccgguCGGGGCCGCCAgguaaauggccAUGAUgaCCg -3'
miRNA:   3'- gCuuCU-------GCUCCGGCGGU-----------UGCUGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.