miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 146589 0.67 0.95575
Target:  5'- aGcAGACG-GGCCgcggcGCCAGCGGCccacgCCu -3'
miRNA:   3'- gCuUCUGCuCCGG-----CGGUUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 104587 0.67 0.95575
Target:  5'- uCGggGAacgucgccCGGGGCCGCCGGuagcaccccgUGGCgcaCCa -3'
miRNA:   3'- -GCuuCU--------GCUCCGGCGGUU----------GCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 80838 0.67 0.95575
Target:  5'- -uGAGACGuGGGCCGUCGGCcuCcUCCa -3'
miRNA:   3'- gcUUCUGC-UCCGGCGGUUGcuGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 52931 0.67 0.95575
Target:  5'- gGgcGACGAGGagaCCGCCGcccuccggGCGcACgugUCCg -3'
miRNA:   3'- gCuuCUGCUCC---GGCGGU--------UGC-UGa--AGG- -5'
5511 3' -53.9 NC_001798.1 + 28267 0.67 0.95575
Target:  5'- aGGAGcGCG-GGCCGC-AGCGccccCUUCCg -3'
miRNA:   3'- gCUUC-UGCuCCGGCGgUUGCu---GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 43475 0.67 0.955365
Target:  5'- gCGggGGCGggcgugaGGGCCGCCGG-GGCa--- -3'
miRNA:   3'- -GCuuCUGC-------UCCGGCGGUUgCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 122835 0.67 0.955365
Target:  5'- uCGggGGCGGcGGCgGCggcucgucccucuCAGCGACgacaUCCc -3'
miRNA:   3'- -GCuuCUGCU-CCGgCG-------------GUUGCUGa---AGG- -5'
5511 3' -53.9 NC_001798.1 + 64100 0.67 0.951799
Target:  5'- cCGGAauCGGGGCCGCCc-CGGCccCCg -3'
miRNA:   3'- -GCUUcuGCUCCGGCGGuuGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 44299 0.67 0.951799
Target:  5'- cCGAugcGGGCGGGGgCGUUGugGACgauggCCa -3'
miRNA:   3'- -GCU---UCUGCUCCgGCGGUugCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 4359 0.67 0.951799
Target:  5'- gCGccGGCGggGGGCgCGCCGGCGGCg--- -3'
miRNA:   3'- -GCuuCUGC--UCCG-GCGGUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 120369 0.67 0.951799
Target:  5'- --uGGGCGAGGCUgugcacgacgcaGCgGGCGAUgUCCg -3'
miRNA:   3'- gcuUCUGCUCCGG------------CGgUUGCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 2505 0.67 0.951799
Target:  5'- gCGggGcGCGGcGGCCGCggCGGCGGCgUCg -3'
miRNA:   3'- -GCuuC-UGCU-CCGGCG--GUUGCUGaAGg -5'
5511 3' -53.9 NC_001798.1 + 74865 0.67 0.947618
Target:  5'- gGAGGugGGGGCaguGCCggUGGgUcgCCa -3'
miRNA:   3'- gCUUCugCUCCGg--CGGuuGCUgAa-GG- -5'
5511 3' -53.9 NC_001798.1 + 2957 0.67 0.947618
Target:  5'- gCGcAGGCGGGGCgCGUCGGCGugcggcgggGCggCCg -3'
miRNA:   3'- -GCuUCUGCUCCG-GCGGUUGC---------UGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 30763 0.67 0.947618
Target:  5'- uGGAGGCcGAGGCgGCCGuGCGGg--CCg -3'
miRNA:   3'- gCUUCUG-CUCCGgCGGU-UGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 48680 0.67 0.947618
Target:  5'- gGggGACG-GGCCGCCcggAGCGGu---- -3'
miRNA:   3'- gCuuCUGCuCCGGCGG---UUGCUgaagg -5'
5511 3' -53.9 NC_001798.1 + 67085 0.67 0.947618
Target:  5'- uCGGAcGACG-GGCCGUCugaccAUGACU-CCg -3'
miRNA:   3'- -GCUU-CUGCuCCGGCGGu----UGCUGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 113820 0.67 0.947618
Target:  5'- uCGggGACaGAGGaCGCCGGCcgg-UCCu -3'
miRNA:   3'- -GCuuCUG-CUCCgGCGGUUGcugaAGG- -5'
5511 3' -53.9 NC_001798.1 + 138337 0.67 0.947618
Target:  5'- aCGAGacGCGAGGCgGCCGAgcCGGCcUUCg -3'
miRNA:   3'- -GCUUc-UGCUCCGgCGGUU--GCUGaAGG- -5'
5511 3' -53.9 NC_001798.1 + 153967 0.67 0.943204
Target:  5'- gCGAGGACGcGGCCGgCGcgcucuCGACcgcggUUCCc -3'
miRNA:   3'- -GCUUCUGCuCCGGCgGUu-----GCUG-----AAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.