miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 23046 0.69 0.899345
Target:  5'- uCGAugguGGACGAGGCCGUUcgcACGA--UCCc -3'
miRNA:   3'- -GCU----UCUGCUCCGGCGGu--UGCUgaAGG- -5'
5511 3' -53.9 NC_001798.1 + 23476 0.66 0.974883
Target:  5'- aCGAcGACGAcGCCGCCcGCGcCcccgCCa -3'
miRNA:   3'- -GCUuCUGCUcCGGCGGuUGCuGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 23551 0.7 0.856745
Target:  5'- aGGAGGCGGGGgUGCCcGCGAgggCCc -3'
miRNA:   3'- gCUUCUGCUCCgGCGGuUGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 23743 0.69 0.892801
Target:  5'- aCGccGACGcGGCCuCCGGCGcCUUCUa -3'
miRNA:   3'- -GCuuCUGCuCCGGcGGUUGCuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 24168 0.68 0.928542
Target:  5'- uGgcGGCG-GGCCGCUu-CGGCUggggCCu -3'
miRNA:   3'- gCuuCUGCuCCGGCGGuuGCUGAa---GG- -5'
5511 3' -53.9 NC_001798.1 + 24581 0.69 0.905657
Target:  5'- gCGGAGGCG-GGCCgcgugGCCGugGAgUgCCu -3'
miRNA:   3'- -GCUUCUGCuCCGG-----CGGUugCUgAaGG- -5'
5511 3' -53.9 NC_001798.1 + 24846 0.74 0.671769
Target:  5'- gCGGcaGCGAGGCCGCCGugG-CcgCCg -3'
miRNA:   3'- -GCUucUGCUCCGGCGGUugCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 25186 0.68 0.928542
Target:  5'- cCGccGACGccGCCGCCG-CGGCcgCCg -3'
miRNA:   3'- -GCuuCUGCucCGGCGGUuGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 25610 0.68 0.921522
Target:  5'- cCGggGGCGGgccccccccggaguGGuCCGCCGagcGCGGCgggcugUCCu -3'
miRNA:   3'- -GCuuCUGCU--------------CC-GGCGGU---UGCUGa-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 26187 0.68 0.928542
Target:  5'- cCGGcgcuGGACGgccGGGCCGCCGccucgggcgcggGCGACg-CCa -3'
miRNA:   3'- -GCU----UCUGC---UCCGGCGGU------------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 26257 0.71 0.815634
Target:  5'- gCGAGGACGAGGCgcacucgcaccgCGCCuGCGcgcGCUggggCCu -3'
miRNA:   3'- -GCUUCUGCUCCG------------GCGGuUGC---UGAa---GG- -5'
5511 3' -53.9 NC_001798.1 + 26505 0.68 0.923178
Target:  5'- gCGggGACGGugcuGGCCGCgGcggGCGGCggCg -3'
miRNA:   3'- -GCuuCUGCU----CCGGCGgU---UGCUGaaGg -5'
5511 3' -53.9 NC_001798.1 + 28267 0.67 0.95575
Target:  5'- aGGAGcGCG-GGCCGC-AGCGccccCUUCCg -3'
miRNA:   3'- gCUUC-UGCuCCGGCGgUUGCu---GAAGG- -5'
5511 3' -53.9 NC_001798.1 + 28779 0.71 0.779707
Target:  5'- gGAGGAgGAGGCgGCggCGGCGGCgcgcgggUCCu -3'
miRNA:   3'- gCUUCUgCUCCGgCG--GUUGCUGa------AGG- -5'
5511 3' -53.9 NC_001798.1 + 28894 0.71 0.815634
Target:  5'- cCGAAGgucugcGCGAGGCCGCUcuccgaagaGACGAUgggagCCc -3'
miRNA:   3'- -GCUUC------UGCUCCGGCGG---------UUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 28990 0.68 0.923178
Target:  5'- aGggGGCGGcGCCgGCCAACcGCgcgCCg -3'
miRNA:   3'- gCuuCUGCUcCGG-CGGUUGcUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 29379 0.66 0.969341
Target:  5'- cCGggGGCGggcaccacucaGGGCCgcGCCGGCGGggcgCCg -3'
miRNA:   3'- -GCuuCUGC-----------UCCGG--CGGUUGCUgaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 29493 0.76 0.520018
Target:  5'- cCGggGACGGGGCCGCCccgagagggGGgGAUUcCCu -3'
miRNA:   3'- -GCuuCUGCUCCGGCGG---------UUgCUGAaGG- -5'
5511 3' -53.9 NC_001798.1 + 30763 0.67 0.947618
Target:  5'- uGGAGGCcGAGGCgGCCGuGCGGg--CCg -3'
miRNA:   3'- gCUUCUG-CUCCGgCGGU-UGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 34034 0.69 0.879032
Target:  5'- aGggGACGGGcGCCacaCCcACGGCUguggCCg -3'
miRNA:   3'- gCuuCUGCUC-CGGc--GGuUGCUGAa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.