miRNA display CGI


Results 41 - 60 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5511 3' -53.9 NC_001798.1 + 138503 0.66 0.974883
Target:  5'- gGAGGGCGuGGCaCGC-GACGAUcUCg -3'
miRNA:   3'- gCUUCUGCuCCG-GCGgUUGCUGaAGg -5'
5511 3' -53.9 NC_001798.1 + 667 0.66 0.974883
Target:  5'- gGGAGACGu-GCCGCCcgccCGACccCCg -3'
miRNA:   3'- gCUUCUGCucCGGCGGuu--GCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 72672 0.66 0.974883
Target:  5'- aCGAGGguaACGugcuGGCCGUCGuGCGGCgggaaaUCCa -3'
miRNA:   3'- -GCUUC---UGCu---CCGGCGGU-UGCUGa-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 23476 0.66 0.974883
Target:  5'- aCGAcGACGAcGCCGCCcGCGcCcccgCCa -3'
miRNA:   3'- -GCUuCUGCUcCGGCGGuUGCuGaa--GG- -5'
5511 3' -53.9 NC_001798.1 + 105743 0.66 0.974883
Target:  5'- -cGGGugGGuGUCGCCGGCGACaaaugagUCCc -3'
miRNA:   3'- gcUUCugCUcCGGCGGUUGCUGa------AGG- -5'
5511 3' -53.9 NC_001798.1 + 111950 0.66 0.969341
Target:  5'- gCGAAGcGCGAGGaaaUGUUGACGAUcgCCg -3'
miRNA:   3'- -GCUUC-UGCUCCg--GCGGUUGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 94565 0.66 0.969341
Target:  5'- -----cCGAGGCCGCCAaggcGCGGgUcgCCa -3'
miRNA:   3'- gcuucuGCUCCGGCGGU----UGCUgAa-GG- -5'
5511 3' -53.9 NC_001798.1 + 55008 0.66 0.962979
Target:  5'- uGccGGCGGGGCCGCCcugccgggaGACgccCCg -3'
miRNA:   3'- gCuuCUGCUCCGGCGGuug------CUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 103462 0.66 0.962979
Target:  5'- cCGGAGGCaGGGCCGCaCGcacCGugUcugggUCCa -3'
miRNA:   3'- -GCUUCUGcUCCGGCG-GUu--GCugA-----AGG- -5'
5511 3' -53.9 NC_001798.1 + 146414 0.66 0.962979
Target:  5'- gGggGACGGGGCgaGCCGggcagaguGCGGag-CCc -3'
miRNA:   3'- gCuuCUGCUCCGg-CGGU--------UGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 58082 0.66 0.965947
Target:  5'- aCGGAGAaaaaGAGGCC-CCGcagggucGCGGCcgCCc -3'
miRNA:   3'- -GCUUCUg---CUCCGGcGGU-------UGCUGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 4593 0.66 0.966266
Target:  5'- aGAAGGCGAgcgGGCCGCUu----CUUCUu -3'
miRNA:   3'- gCUUCUGCU---CCGGCGGuugcuGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 94984 0.66 0.966266
Target:  5'- uGcAGGCGGcGGCCGCCugggccccgcagGGCGGCgcgggCCu -3'
miRNA:   3'- gCuUCUGCU-CCGGCGG------------UUGCUGaa---GG- -5'
5511 3' -53.9 NC_001798.1 + 131011 0.66 0.966266
Target:  5'- ----uACG-GGCCGCCGccagGCGACgggCCg -3'
miRNA:   3'- gcuucUGCuCCGGCGGU----UGCUGaa-GG- -5'
5511 3' -53.9 NC_001798.1 + 77646 0.66 0.966266
Target:  5'- aCGAAcuUGAGGCCGCCGuCGcCgaCCu -3'
miRNA:   3'- -GCUUcuGCUCCGGCGGUuGCuGaaGG- -5'
5511 3' -53.9 NC_001798.1 + 91328 0.66 0.966266
Target:  5'- --cAGACGccGCCcgaGCCGcCGGCUUCCc -3'
miRNA:   3'- gcuUCUGCucCGG---CGGUuGCUGAAGG- -5'
5511 3' -53.9 NC_001798.1 + 154124 0.66 0.966266
Target:  5'- cCGgcGGCGGGGaCC-CCGGCGGCg--- -3'
miRNA:   3'- -GCuuCUGCUCC-GGcGGUUGCUGaagg -5'
5511 3' -53.9 NC_001798.1 + 56416 0.66 0.969043
Target:  5'- gCGggGGCuGGuGGCUGCCGugGuGCUcuaggaccggaauUCCg -3'
miRNA:   3'- -GCuuCUG-CU-CCGGCGGUugC-UGA-------------AGG- -5'
5511 3' -53.9 NC_001798.1 + 78566 0.66 0.969341
Target:  5'- gGGAGGCGcuGGCCGCgcGCGAgcgCCg -3'
miRNA:   3'- gCUUCUGCu-CCGGCGguUGCUgaaGG- -5'
5511 3' -53.9 NC_001798.1 + 86022 0.66 0.969341
Target:  5'- cCGGAGACGuGGGCguaCGCCGACcugaUCCu -3'
miRNA:   3'- -GCUUCUGC-UCCG---GCGGUUGcugaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.